Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c12
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.40 
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           28   1.2  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.1  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   6.5  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    25   6.5  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   8.6  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   8.6  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 219 NFSILFFDFPKFYCCYTAVLAETEGRKEWNHLRSCDE 329
           +FS +  D+ + Y  Y  +       K WN+L SC+E
Sbjct: 448 DFSFMLRDYKRAYEIYDEIRNTFSQDKAWNYLASCEE 484


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +1

Query: 289 RDVKNGTIYARVMKHMNKLLGIEWHIRNGEYLSGDYGAVILNNHQCI 429
           R VK G ++  + KH    +  +W + +G Y           +H CI
Sbjct: 131 RQVKFGALFDALKKHCENNVKGDWWLASGHYAKSVVNIETNESHMCI 177


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 292 DVKNGTIYARVMK-HMNKLLGIEWHIRNGEYL--SGDYGAVIL 411
           D+ N     +++  H N L G+ W + NGEYL   G  G ++L
Sbjct: 247 DISNEKFNPQILHWHANPLNGLSWAL-NGEYLLSGGQEGVLVL 288


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
 Frame = +1

Query: 274 FLLRPRDVKN--GTIYARVMKHMN-KLLG--IEWHIRNGEYLSGDYGAVILNNHQCIFDA 438
           FL RPRDV        +  +  MN  L G    +  R G    G +G         + +A
Sbjct: 476 FLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNA 535

Query: 439 LGMFNAWEIAGKMCVIMKKELFYAGT 516
           L    A     + CV  +K L  +GT
Sbjct: 536 LDNVEARMYVDRRCVFFEKPLLESGT 561


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 480 CNNEERIILRRYLRNSSLPGRR 545
           CN++ +++    ++N+ LPG+R
Sbjct: 106 CNHDSKLVYMSLVQNNGLPGQR 127


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 606 FVGVLDGFMSIFCVFSIYVNPAAQVS 529
           F+G L  F+ ++ +F   + PAA+VS
Sbjct: 274 FLGFLTFFIVVYFIFGYALKPAARVS 299


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 118 MWIILYLPFILCTILYAVT-ALYGHR 192
           +WI++++  ++C++L  V   + GHR
Sbjct: 89  IWILIFIVALICSVLIGVLGGVLGHR 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,742
Number of Sequences: 5004
Number of extensions: 52000
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)