Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c12
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    28   5.1  
01_03_0196 - 13696056-13697448,13697676-13697713                       28   6.7  
04_03_1015 - 21734381-21736534                                         27   8.9  

>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 565 FFYLCKSRRPGKLLFRRYRRKIILSSLLHTFFPLFP 458
           +FY+  S   G+ LFR Y   + LS    T   LFP
Sbjct: 478 YFYIIGSGLLGEFLFRSYVEDVFLSRSWITLLELFP 513


>01_03_0196 - 13696056-13697448,13697676-13697713
          Length = 476

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 310 IYARVMKH-MNKLLGIEWHIRNGEYLSGDYGAVILNNHQCI 429
           +Y R+M   M+K LG+E +I     +  DY  ++L N + I
Sbjct: 80  VYIRMMHSTMSKFLGLETYITAASLVMADYAVLLLINTRYI 120


>04_03_1015 - 21734381-21736534
          Length = 717

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 540 AQVSCYSEG-TGVK*FFLHYYTHFSRYFPRIEHPECI 433
           A VSC SEG  G+   +    T      PRIEH EC+
Sbjct: 595 ALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECM 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,647
Number of Sequences: 37544
Number of extensions: 303662
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)