Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c09
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   4.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.2  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 524 IFIHIIPQGTPYILIPFIVIIE 589
           +F   +P GTP  LIP +V+IE
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIE 170


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 512 NTNHIFIHIIPQGTPYILIPFIVIIET 592
           N+ H F  +I QGT  I   F++ IE+
Sbjct: 391 NSQHSFFQLIHQGTKLIPADFLIPIES 417


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 187 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 86
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,523
Number of Sequences: 5004
Number of extensions: 22320
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)