Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c07
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   4.6  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   6.1  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   8.0  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 70  KFLYILKWLMQNFS 111
           K LYI  WL+QNF+
Sbjct: 169 KILYICHWLLQNFN 182


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 231 NNLRGCYYFLEYE 269
           NN+RGC YF  Y+
Sbjct: 280 NNVRGCSYFYSYQ 292


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 285 FSGIYTRTLKSSSSLEDYCHAKVTFTHKLIILVVNL 178
           F GI     K+ + +EDY     TF +   ILV+N+
Sbjct: 230 FLGINLGKNKNGNEIEDYVEGVRTFGNFADILVINV 265


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = -2

Query: 405 IEGRSDANKSNQYTKYYRVTPGFSRSGLEXSSRFASFXEIFSGIYTRTL 259
           +  R +   +   T +  +  GF   G E S  F    EI SG+    +
Sbjct: 215 LSARLEETDTPSSTHWIEINAGFKEVGDELSENFQRKQEILSGLQNNVI 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,812
Number of Sequences: 5004
Number of extensions: 26668
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)