Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c07
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0130 - 10474607-10475994,10479609-10479706,10479878-104800...    29   2.0  
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105...    28   3.5  
02_05_0771 - 31628535-31629133,31629223-31629987,31630808-316309...    28   4.6  
11_03_0155 + 10871512-10871949,10874414-10874695,10874782-108749...    27   6.0  
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    27   8.0  
02_05_1250 - 35246238-35246567,35246674-35246994                       27   8.0  

>11_03_0130 -
           10474607-10475994,10479609-10479706,10479878-10480047,
           10480382-10480465,10481359-10482009,10482016-10482084
          Length = 819

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 377 LLFASERPSIRLPXKWLPRVATVPNLTKTPLRTSPCS 487
           +LF    PS RLP  W P   T   +T   +R  P +
Sbjct: 607 VLFGDHNPSGRLPVTWYPEEFTKVPMTDMRMRADPAT 643


>11_03_0132 -
           10505910-10505996,10507419-10507499,10509582-10510528,
           10510645-10510742,10511273-10511442,10511551-10511832,
           10514544-10514936
          Length = 685

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 377 LLFASERPSIRLPXKWLPRVATVPNLTKTPLRTSPCS 487
           +LF    PS RLP  W P   T   +T   +R  P +
Sbjct: 563 VLFGDHNPSGRLPVTWYPEEFTRIPMTDMRMRADPAT 599


>02_05_0771 -
           31628535-31629133,31629223-31629987,31630808-31630905,
           31631024-31631193,31631297-31631596,31632208-31632618
          Length = 780

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 377 LLFASERPSIRLPXKWLPRVATVPNLTKTPLRTSP 481
           +LF    P  RLP  W P+  T   +T   +R  P
Sbjct: 574 VLFGEHNPGGRLPVTWYPKEFTSVPMTDMRMRADP 608


>11_03_0155 +
           10871512-10871949,10874414-10874695,10874782-10874951,
           10875068-10875165,10875775-10877135
          Length = 782

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 377 LLFASERPSIRLPXKWLPRVATVPNLTKTPLRTSPCS 487
           +LF    P  RLP  W P   T   +T   +R  P +
Sbjct: 578 VLFGDHNPGGRLPVTWYPEEFTKVPMTDMRMRADPAT 614


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 463 GLGKVXHSCDPWQPLXRQSY*RPFRRKQKQSVYKILPRNSR 341
           GLG+V HS + +         + FRRK KQ+ +    R S+
Sbjct: 186 GLGEVQHSGNAFSTPEPSDVNKNFRRKMKQAEFSTTNRGSQ 226


>02_05_1250 - 35246238-35246567,35246674-35246994
          Length = 216

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 330 SGLEXSSRFASFXEIFSGIYTRTLKSSSSLEDYCHAKVTFTHK 202
           S  + ++RFA+  ++F       L S   + D C A VT T++
Sbjct: 43  SSEQGAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYE 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,744,483
Number of Sequences: 37544
Number of extensions: 147830
Number of successful extensions: 329
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)