Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c07
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    27   5.5  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    27   7.2  
U39996-3|AAA81089.1|  621|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39996-2|AAU20848.1|  607|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    27   9.5  

>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 417 CGSRIEGRSDANKSNQYTKYYRVTPGFSRSGLEXSSRFA 301
           C   + GR+    SN  +K  + TP FS+  L   SR A
Sbjct: 108 CRIFVRGRASTTASNPESKPNKSTPSFSKPSLSIISRNA 146


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
            protein Y47D3A.26 protein.
          Length = 1205

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 155  FEFWKFIKXAFAESSLKFCINHFKMYKNLLK 63
            F  W+ +K    E  L  C+N  K Y+N+ K
Sbjct: 958  FSKWQNVKPRELEKKLLECVNELKKYENVNK 988


>U39996-3|AAA81089.1|  621|Caenorhabditis elegans Hypothetical
           protein C56E6.3a protein.
          Length = 621

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 63  NLKSGWSCXSSFGQKKKKKI 4
           NLKS WS  SS  +K +KK+
Sbjct: 230 NLKSTWSLFSSSSEKNEKKL 249


>U39996-2|AAU20848.1|  607|Caenorhabditis elegans Hypothetical
           protein C56E6.3b protein.
          Length = 607

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 63  NLKSGWSCXSSFGQKKKKKI 4
           NLKS WS  SS  +K +KK+
Sbjct: 230 NLKSTWSLFSSSSEKNEKKL 249


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 176 ILVLFLYFEFWKFIKXAF 123
           +  L++ F+FWKF+K  F
Sbjct: 290 LYTLYISFDFWKFLKIVF 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,287
Number of Sequences: 27780
Number of extensions: 147678
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)