Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c06
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    31   0.16 
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    29   0.47 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.47 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       29   0.83 
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    29   0.83 
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    28   1.1  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   1.9  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   4.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   5.8  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    26   5.8  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 405 IPSPGQFPVSTLNRYLRACHKVWHFSCC 322
           +P+P ++P    N Y  ACH   +F CC
Sbjct: 251 LPTPEEYPYRYNNDYCSACHGPGNFLCC 278


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +3

Query: 228 NPSTYLGMEIKNSKEGIILTQRSYINDVLEKYNMKN 335
           N +   G+E+++ +EG ++T+ + + D LE YN+K+
Sbjct: 306 NITRQCGIEVEDEEEGAVITKPTLV-DALEGYNVKS 340


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 KMPNLVTRPQVAIQSRYRKLPRRRNIPIGKQWEVYCTCL 447
           K  +  ++  + + S +R+    +NIP  K W  YC CL
Sbjct: 335 KTNDAFSKKLITMLSNFREGDSAKNIPTHKLWCTYCLCL 373


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 372 KSIQETAQEKEYPYREAVGSLLYLSTR--TRPDIAQAVNLVSRKVENPTREDVTKLKKIF 545
           KS+ +TA+E E   REA+ + L    R  T  D+A+A  L+       T +     + + 
Sbjct: 164 KSVLKTAEELEKEDREAMSAKLQELIRRGTPADLAEANKLMKVMAGYDTEQKQKYKEHVL 223

Query: 546 KYLVGTKHKGILFNE 590
             L   K K  LF E
Sbjct: 224 VDLEKVKRKAALFGE 238


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +2

Query: 203 QISNEKE*KSKYLSGYGNKKLKRRNHSYSEILHK*RTGKIQHEK 334
           +I  +KE + +YL+G+  +K++RR H+  ++  + R  ++   K
Sbjct: 26  EIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRK 69


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +3

Query: 360 SSDSKSIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKLKK 539
           +SD +S ++    +     EA   ++Y     + ++A  +++++ ++ NPT E +  +K 
Sbjct: 85  ASDPESYEQEGNAEGIEAAEAYKEIVY---DLQKNLASEMDVINTRIVNPTGELLKIVKD 141

Query: 540 IFKYLVGTKHK 572
           + K L+   HK
Sbjct: 142 VDKLLLKRDHK 152


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 216 KKNENPSTYLGMEIKNSKEGIILTQRSYIND 308
           K  E  STYLG ++KN+    ++T  +Y ND
Sbjct: 170 KMRETASTYLGKDVKNA----VVTVPAYFND 196


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 276 IILTQRSYINDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYREAVGSLLYLS 446
           I+  +R+  + VL K  +   K   TP  SD K   +   EKEY  R+     +YL+
Sbjct: 711 IMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIYLA 767


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 375 SIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVE 503
           S +   QE E P  E   SLL+ + RT+      +N V + ++
Sbjct: 548 STENVEQEVETPVWETFSSLLHANARTKKKELLNINFVRKYIQ 590


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = +3

Query: 306 DVLEKYNMKNAKPCDT-------PASSDSKSIQETAQEKEYPY 413
           D    YN+ N+KP +          +S++KSI    QEK + Y
Sbjct: 194 DFENPYNLSNSKPVNNNNEDRVEAVTSENKSIDSAPQEKNHEY 236


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 459 PDIAQAVNLVSRKVENPTREDVTKLKKIFK 548
           P +   +  +  ++E   RED T+LKK+ K
Sbjct: 180 PRLENTIKYIESELEELEREDFTRLKKVQK 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,784
Number of Sequences: 5004
Number of extensions: 64764
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)