Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c05
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 74 2e-14
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 65 1e-11
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 55 8e-09
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 54 2e-08
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 39 7e-04
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 38 0.002
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 31 0.14
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 29 0.77
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 28 1.3
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 27 2.3
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 26 4.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.4
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 5.4
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 25 7.2
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 7.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 9.5
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 74.1 bits (174), Expect = 2e-14
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 32/196 (16%)
Frame = +2
Query: 113 FRMAHSTFSAVDEYGFERHDDF-DYESYEDFMSNYLKVLATRAQKWAALLGEG------- 268
++ +HS++ D YGF++ + F + Y + Y + L R Q+W L E
Sbjct: 225 YKPSHSSW---DIYGFKKANQFYTVDQYNTWYGPYSRYLERREQRWKLFLQENGIDYIHQ 281
Query: 269 -KSV--KRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILDSPFEKEL-- 433
S+ R+ +R++RKGIP E+R + W S ++ ++ P LY+ + K+
Sbjct: 282 SPSIFPSRSAKTQRFIRKGIPPEYRGNAWFYYSGGYELLQRNPKLYETLWRCACIKKPSD 341
Query: 434 VDLVKTDLPRTFPDNIYFTKEANHQ-------------------THLFNILIAYAHNNRL 556
DL++ DL RTFPDN++F ++ H + L +L+ +A
Sbjct: 342 SDLIERDLYRTFPDNVHFRHKSKHSRNSSDASEHSSEEPDVPMISKLRRVLMTFATYLPE 401
Query: 557 VGYCQGLNYIAGLLLL 604
GYCQ LN++AG LL
Sbjct: 402 NGYCQSLNFLAGFFLL 417
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 64.9 bits (151), Expect = 1e-11
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +2
Query: 278 KRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILDSPFEKELVDLVKTDL 457
KR + + V+ G+P ++ VW+ S A ++ P Y+++L E E + + D+
Sbjct: 492 KRWHKFRELVKNGVPLCYKAKVWLECSGAYQLHS--PGYYEELLSRTDEVESASVAQIDM 549
Query: 458 P--RTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLLL 604
RT N++F + L IL+AY+ +N +GYCQG+N I LLL
Sbjct: 550 DINRTMAKNVFFGGKGPGIPKLRRILVAYSRHNPHIGYCQGMNVIGAFLLL 600
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 55.2 bits (127), Expect = 8e-09
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = +2
Query: 260 GEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILDSPFEK--EL 433
G ++ +T ++ V+ GIP+ R +W S + R + Y K +DS E
Sbjct: 198 GANFNLIQTPNFQKLVQSGIPNNLRADIWETCSGSLFPRWKSKGFYAKNIDSVINNRCEY 257
Query: 434 VDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYI-AGLLLLAT 610
+ ++ DL R+ PD + T L IL+ Y+ N+ VGYCQ +N + A LL+ T
Sbjct: 258 SEEIEKDLTRSLPDYPAYQSPTGINT-LRRILLFYSETNKEVGYCQAMNIVLAALLVYCT 316
Query: 611 KK 616
++
Sbjct: 317 EE 318
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 53.6 bits (123), Expect = 2e-08
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Frame = +2
Query: 239 QKWAALLGEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILD-- 412
+++ L G S+ R + + VR +P++ R +W S + R + D Y +L
Sbjct: 195 KEYFLLYGANLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVY 254
Query: 413 SPFEKELVDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAG 592
S ++ ++ DL R+ P+ + E L N+L+A++ N+ VGYCQ +N +A
Sbjct: 255 SGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINA-LRNVLVAFSWKNQEVGYCQAMNIVAA 313
Query: 593 LLLL 604
LL+
Sbjct: 314 ALLI 317
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 38.7 bits (86), Expect = 7e-04
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Frame = +2
Query: 230 TRAQKWAAL----LGEGK---SVKRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFP 388
+R QKW ++ L G S ++T + KGIP R W + ++
Sbjct: 123 SRIQKWKSMCSIHLVSGNQLHSFRKTRKLILRTFKGIPDCWRSIAWWSFLVDSLPDKKLI 182
Query: 389 DLYQKILDSPFEKEL-VDLVKTDLPRTFPDNIYFTKE-ANHQTHLFNILIAYAHNNRLVG 562
D Y ++ + + ++ +DL D+PRT + F K Q LF +L A A VG
Sbjct: 183 DKYYQLNEQICDYDVQIDL---DVPRTAATHFLFRKRYIGGQRLLFRVLHAVALYIPRVG 239
Query: 563 YCQGLNYIAGLLLL 604
Y QG+ IA LL+
Sbjct: 240 YVQGMASIAATLLI 253
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 37.5 bits (83), Expect = 0.002
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Frame = +2
Query: 224 LATRAQKWAALLGEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAI--------SEADKMRE 379
L +R +K++ +L + N ++ GIPSEHRP VW + S + +
Sbjct: 188 LVSRIKKFSRILDA--PIVDLNALRTLAWNGIPSEHRPIVWKYLLGYLPCNASRREVTLK 245
Query: 380 QFPDLYQKILDS---------PFEKELVDLVKTDLPRTFPDNIYFTKEANHQTHLFNILI 532
+ D Y DS P ++ + + D+PRT P + + Q L IL
Sbjct: 246 RKRDEYNAAKDSCFNTNTEPPPLDQTIWRQIVLDVPRTNPSILLYQNPLT-QRMLERILY 304
Query: 533 AYAHNNRLVGYCQGLN 580
+A + GY QG++
Sbjct: 305 VWASRHPASGYVQGIS 320
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 31.1 bits (67), Expect = 0.14
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Frame = +2
Query: 308 RKGIPSEHRPSVW-MAI-------------SEADKMREQFPDLYQKILDSPFEKELVDLV 445
R+GIPS R VW AI + A+ + + + +++ ++ +E V +
Sbjct: 213 RQGIPSRVRGRVWEKAIGNNLKLDYQSFFNARANAQKREAAEKAEQMNNANQFREDVCAL 272
Query: 446 KTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLLL 604
+ DL T P F E + L +L AY++ Y G ++I LLLL
Sbjct: 273 ELDLQSTMPHYSLFHTEGPLRRDLIGLLRAYSYYRFDTSYIPGTSFIGALLLL 325
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 28.7 bits (61), Expect = 0.77
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 398 QKILDSPFEKELVDLVKTDLPRTFP-DNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQG 574
+K LD F E++ ++ + P DNI A +L +L + A VGY QG
Sbjct: 650 RKDLDRTFAPEILSHFFSNRQQLEPTDNI-----AESTANLHRVLRSLAIVLPQVGYTQG 704
Query: 575 LNYIAGLLLL 604
+++IAG LL+
Sbjct: 705 MSWIAGALLM 714
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -1
Query: 559 DKSVVVSIGNQNVEQMCLMVCLLCKIYIIGKG--SRQVCFN*IHKLLFKRTV*YFLIQIR 386
D +V GN CL + +LC Y + + + + L K+TV FL++I
Sbjct: 365 DAIFIVDEGNAKEAASCLALMILCLYYDLHMHLLAHPISLSASQSHLTKQTVRQFLVKIT 424
Query: 385 ELFS 374
EL S
Sbjct: 425 ELHS 428
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 158 FERHDDFDYESYEDFMSNYLKVLATRAQKWAALLG--EGKSVKRTNTVKRYVRKGI 319
F D DY S E+F+ +L +LA + A LL + + + K+YV + +
Sbjct: 253 FANIDFGDYSSSEEFLKEHLNILADEEESDAILLEAFNAELEGKPSLAKQYVHQAL 308
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 170 DDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRYV 307
D FDY E+ ++ Y +Q + A LGE K K N Y+
Sbjct: 72 DSFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLVNFCLHYI 117
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 583 VIKTLAIPDKSVVVSIGNQNVEQMCLMV 500
++KTL I D S ++ +N + +CL++
Sbjct: 606 MLKTLTILDYSTIIRTKEENAKLLCLLI 633
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 185 ESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRYVRKGI 319
E ++ LKVLAT W +L + V + N +K + +G+
Sbjct: 56 EGLQNLAEEKLKVLATLVSWWPEILQQFSVVFQGNELKDFESEGV 100
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +2
Query: 254 LLGEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILDSPFEKEL 433
L+G+ +K + + + S + ++ +A EA+K + + Y+ FE
Sbjct: 261 LIGDESLIKYSAAAHTRICFAVNSPCQEALAIAFGEAEK--HNYYEEYKSSYKKRFEILA 318
Query: 434 VDLVKTDLPRTFPDNIYFT 490
+ ++P T PD Y+T
Sbjct: 319 KAFDQLEIPYTIPDGSYYT 337
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 317 IPSEHRPSVWMAISEADKMREQFPDLYQKILDSPFEKELVDLVKTDLPRTFPDNIYFTKE 496
+PS + P++W + K ++ + +K +D + ++++ + IY E
Sbjct: 234 LPSVNDPNIWAVRCKIGKEKDIVFTIMRKAMDLQYTSSPLEIISAFQRDSLVGYIYV--E 291
Query: 497 ANHQTHLFN----ILIAYAHNNRLV 559
A Q+H+ + +L Y +N LV
Sbjct: 292 ARKQSHVLDALNGVLNVYTNNMILV 316
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 239 QKWAALLGEGK--SVKRTNTVKRYVRKGIPS-----EHRPSVWMAISEADKMREQFPDLY 397
Q+ LL E K +++ N V+R+ K S + + ++WM +R Q+ +LY
Sbjct: 76 QRQKELLNEMKRSTIQDFNEVRRFNGKLFYSPPRLFKEKSALWMYNFHGKSLRNQYKELY 135
Query: 398 QKILDSPF 421
+ SPF
Sbjct: 136 KDWQGSPF 143
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 503 HQTHLFNILIAYAHNNRLVGYCQGLNYIAGLL--LLAT 610
H+ IL YA N +GY QG+N I L +LAT
Sbjct: 248 HREAAERILFIYAKLNPGIGYVQGMNEILAPLYYVLAT 285
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 9.5
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +2
Query: 146 DEYGFERHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRYVRKGIPS 325
DE DFD ES+ + + L + T+ ++ A+ SV+ NT K + I
Sbjct: 315 DELDKHLKSDFDIESFCFLLHHLLSLYQTQKKELASSNELLASVRDENTKKLKELQDIIE 374
Query: 326 E--------HRPSVWMAISEADKMREQFPDLYQKIL 409
E HR A DK +E P Y L
Sbjct: 375 EQSKHMARLHREGFSEAAENNDKPKETMPCTYDSSL 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,796
Number of Sequences: 5004
Number of extensions: 50378
Number of successful extensions: 174
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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