Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c05
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 80 1e-15
08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574... 66 2e-11
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 54 1e-07
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 50 1e-06
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 40 0.002
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742... 36 0.037
09_04_0733 - 19791745-19791906,19792072-19792173,19792246-197923... 32 0.34
07_03_0657 + 20362266-20362488,20362576-20362698,20362779-203628... 32 0.34
11_06_0222 - 21413676-21413696,21413813-21413896,21414042-214143... 31 0.80
07_03_0073 - 13063209-13063403,13063489-13063579,13063707-130637... 31 0.80
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 31 0.80
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 30 1.8
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320 29 2.4
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084... 29 3.2
10_08_0639 + 19505934-19506088,19506584-19506633,19508153-195088... 29 4.2
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 29 4.2
09_04_0298 + 16475693-16475849,16476148-16476265,16476364-164764... 29 4.2
09_02_0124 - 4546722-4547107,4547677-4547854,4548027-4548215,454... 28 5.6
12_01_0523 + 4162673-4164427 28 7.4
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 28 7.4
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.4
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 9.8
02_05_1214 + 34976814-34979813 27 9.8
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 80.2 bits (189), Expect = 1e-15
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Frame = +2
Query: 233 RAQKWAALLGEGKS-----VKRT-NTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDL 394
R +KW ++G G S V+R + VKR +RKGIP R VW IS + + P +
Sbjct: 76 RIKKWRKMIGVGGSDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGV 135
Query: 395 YQKILDSPFEKELVDLVKTDLPRTFPDNIYFT-KEANHQTHLFNILIAYAHNNRLVGYCQ 571
Y+ ++ +++++ D+ RTFP +I+F + Q L+N+L AY+ +R VGY Q
Sbjct: 136 YETLVIYETSASELEIIR-DISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQ 194
Query: 572 GLNYIAGLLLL 604
G+ ++AGLLLL
Sbjct: 195 GMGFLAGLLLL 205
>08_02_0271 -
15156737-15156868,15157134-15157235,15157342-15157419,
15157523-15157616,15157736-15157872,15157989-15158105,
15158470-15158940
Length = 376
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +2
Query: 284 TNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILDSPFEKELVDL---VKTD 454
T T++R +RKG+P RP VW+++S A K R P+ Y L E + + D
Sbjct: 99 TITLRRLIRKGVPPVLRPKVWLSVSGAAKKRSTVPETYYDELIRATEGKTTPATLQIDHD 158
Query: 455 LPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQ 571
LPRTFP + + E Q L +L+ Y+ + VGYCQ
Sbjct: 159 LPRTFPCHSWLNSEEG-QASLRRVLVGYSFRDSEVGYCQ 196
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +2
Query: 443 VKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLLL 604
++ DLPRTFP + ++ + L +L+AYA +N VGYCQ +N+ AGLLLL
Sbjct: 258 IEKDLPRTFPGHPALDEDGRNA--LRRLLLAYARHNPAVGYCQAMNFFAGLLLL 309
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +2
Query: 443 VKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLLL 604
++ DLPRTFP + ++ + L +L AYA +N VGYCQ +N+ AGL LL
Sbjct: 396 IEKDLPRTFPGHPALDEDGRNA--LRRLLTAYARHNPSVGYCQAMNFFAGLFLL 447
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 386 PDLYQKILDSPFEKEL-VDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVG 562
P + K SPF E ++ DLPRTFP + ++ + L +L AYA +N VG
Sbjct: 250 PTMEGKPKGSPFSSEKWKGQIEKDLPRTFPGHPALDEDGRNA--LRRLLTAYARHNPSVG 307
Query: 563 YCQ 571
YCQ
Sbjct: 308 YCQ 310
>02_05_1171 +
34672997-34673122,34673500-34673595,34674126-34674229,
34674303-34674502,34674643-34674765,34674910-34674998,
34675579-34675642,34675906-34676049,34676173-34676270,
34676479-34676724,34676826-34676909,34677011-34677022
Length = 461
Score = 35.5 bits (78), Expect = 0.037
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +2
Query: 389 DLYQKILDSPFEKELVDLVKT------DLPRTFPDNIYFTKEANHQTHLFNILIAYAHNN 550
D Q+ D+P KE++ T D+ RT +Y+ + N L++IL Y+ +
Sbjct: 151 DAEQQASDTPLPKEVIQWKLTLHQIGLDVNRTDRQLVYYESQEN-LARLWDILAVYSWVD 209
Query: 551 RLVGYCQGLN 580
+ +GYCQG++
Sbjct: 210 KDIGYCQGMS 219
>09_04_0733 -
19791745-19791906,19792072-19792173,19792246-19792331,
19792655-19792926,19793430-19793521,19793615-19793730,
19794206-19794389,19794467-19794599,19794981-19795075
Length = 413
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 395 YQKILDSPFEKELVDLVK---TDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGY 565
Y I D+ E +++++ D PRT PD +F + Q L IL +A + GY
Sbjct: 158 YYDIPDTERSDEEINMLRQIAVDCPRTVPDVTFF-QHPQIQKSLERILYTWAIRHPASGY 216
Query: 566 CQGLN 580
QG+N
Sbjct: 217 VQGIN 221
>07_03_0657 +
20362266-20362488,20362576-20362698,20362779-20362867,
20363016-20363121,20363211-20363308,20363717-20363986,
20364310-20364393,20364579-20364599
Length = 337
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +2
Query: 434 VDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLLLATK 613
+D+++TD F +N KE + + L++IL YA ++ VGYCQG++ + +++ K
Sbjct: 76 LDVLRTDRTMVFYEN----KE--NLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLK 129
>11_06_0222 -
21413676-21413696,21413813-21413896,21414042-21414305,
21414495-21414592,21414691-21414796,21414872-21414960,
21415048-21415170,21415379-21415566,21416069-21416172,
21416743-21416838,21417061-21417159
Length = 423
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +2
Query: 452 DLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLLL 604
D+ RT +++ + N + L++IL YA ++ +GYCQG++ + +++
Sbjct: 165 DVLRTDRSMVFYENKEN-LSKLWDILAVYAWIDKEIGYCQGMSDLCSPMIV 214
>07_03_0073 -
13063209-13063403,13063489-13063579,13063707-13063736,
13063827-13063937,13064023-13064260,13064366-13064837,
13065054-13065563,13065993-13066481
Length = 711
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 197 DFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAI-SEADKM 373
D +NY++ T ++W + E +S K+ + K +R+ I ++ V S A +
Sbjct: 142 DMNTNYVQKNKTPFEEWGTISAEAQSYKKRDAYKAKMRQEITNQVTQQVTQQFYSLAAQH 201
Query: 374 REQFPDLYQKILDS 415
+ FPDL L S
Sbjct: 202 PQAFPDLVPHGLQS 215
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 248 AALLG-EGKSVKRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKIL 409
A+LLG + K+ R RKG S H P +W ++ A + E+F ++++L
Sbjct: 710 ASLLGTDAKAACHREEPHRRRRKGPRSLHYPQLWKLLTSASRAGEEFSCRHRRLL 764
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 431 LVDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLN 580
+VD+V+TD ++ F E+ + + +IL YA + GYCQG++
Sbjct: 394 VVDVVRTD------SHLDFYGESRNMARMSDILAVYAWVDPSTGYCQGMS 437
>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
Length = 463
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 ERHDDFDYESYEDFMSNYL-KVLATRAQKWA 250
ER DFD+E+ E F +YL K T A KWA
Sbjct: 370 ERGGDFDFETCELFREHYLGKGDTTSALKWA 400
>04_04_0209 +
23607749-23607893,23607990-23608043,23608156-23608433,
23609524-23609894,23610033-23610096,23610472-23610603
Length = 347
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 296 KRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQK 403
+R++R E+ P VW + A K R PD Y +
Sbjct: 113 RRFIRPSNNKENVPPVWAVKATATKRRSPLPDWYPR 148
>10_08_0639 +
19505934-19506088,19506584-19506633,19508153-19508893,
19509762-19509922
Length = 368
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 503 HQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLL 601
H L IL AYA + +GYCQG++ + LL
Sbjct: 112 HAARLVPILEAYAIYDPEIGYCQGMSDLLAPLL 144
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 326 EHRPSVWMAISEADKMREQFPDLYQKILDSPFEKELVDLVKTDLPR 463
EH PS A++E +REQ D Y L + EKEL L + +L R
Sbjct: 378 EHAPSP--ALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRR 421
>09_04_0298 +
16475693-16475849,16476148-16476265,16476364-16476467,
16478794-16478808,16479276-16479481,16479567-16479719,
16479842-16480123
Length = 344
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 287 NTVKRYVRKGIPSEHRPSVWMAISEADKMREQFPDLYQKILDS-PFEKELVDLVKTDLPR 463
N ++K I + +++A K+R++ + YQKI+ S P + + +D + LP
Sbjct: 257 NKFNNNLKKQITGWNLGKAVQGVTKAFKLRKEKEEFYQKIMSSMPEQLQSIDEIVNSLPE 316
Query: 464 TFPD 475
D
Sbjct: 317 ADDD 320
>09_02_0124 -
4546722-4547107,4547677-4547854,4548027-4548215,
4548602-4548712,4549024-4549071,4549825-4549966,
4550349-4550695
Length = 466
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 398 QKILDSPFEKELVDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRL 556
QK+L++ + +VDL+ + R F I++ + HL +L A HN+R+
Sbjct: 292 QKMLETAAAEWVVDLIVIVVNRNFFRLIHYVHGRHVLAHLQILLAAREHNHRI 344
>12_01_0523 + 4162673-4164427
Length = 584
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 224 LATRAQKWAALLGEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAISEADKMREQF 385
L RA+ + +++ + +++ IP E P VW A+ A KM + F
Sbjct: 343 LVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNF 396
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Frame = +2
Query: 203 MSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRYVRKGIPSEHRP------SVWMAISEA 364
+SN+++V+ T K A+ S +R N ++ + E +P ++ +
Sbjct: 440 LSNFVRVVGTLMIKILAVFSLFVS-RRGNMLENVHPSNVEDEPQPRSATEDNMSACLQRL 498
Query: 365 DKMREQFPDLYQKILDSPFEKELVDLVKTDLPRTFPDNIYFTKEANHQT 511
+K+ L K D P EKE + L D +T ++ TK H T
Sbjct: 499 EKLESLCNHLMSKPPDMPKEKECLLLQSFDRIKTIESDLERTKRVLHMT 547
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 428 ELVDLVKTDLPRTFPDNIYFTKEANHQTHLFNILIAYAHNNRLVGYCQGLNYIAGLLL 601
EL ++ DL R +P+ F + Q+ L IL+ ++ +GY QG++ + LL
Sbjct: 92 ELEKMLNQDLSRLYPELGNFFQTTICQSMLGRILLVWSLRYPELGYKQGMHELLAPLL 149
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +2
Query: 362 ADKMREQFPDLYQKILDSPFEKELVDLVKTDLP---RTFPDNI 481
A K + PD QKI SPF + L K +P T PD+I
Sbjct: 240 ASKSNDHSPDKRQKIYSSPFPFAMSVLNKQSVPEIGETCPDSI 282
>02_05_1214 + 34976814-34979813
Length = 999
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 203 MSNYLKVL-ATRAQKWAALLGEGKSVKRTNTVKRYVRKGIPSEHRPSVWMAISEADK 370
+ NY V AT A W + K +++ V+ +VR +H VW +SE +
Sbjct: 285 LGNYRGVTPATAAHHWDQVFAFSKETIQSSFVEVFVRARGSDDHVGRVWFDLSEVPR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,270
Number of Sequences: 37544
Number of extensions: 280398
Number of successful extensions: 694
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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