Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c04
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    51   5e-07
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    27   7.5  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +3

Query: 234 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 413
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH                R  IV G 
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76

Query: 414 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 584
            EP  ++   P  +  E ++LA                 KA E   DP+ KGI DFW
Sbjct: 77  VEPTKEQIDTPILEGLEGDQLAELY--------------KAAE--ADPSAKGIKDFW 117


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 347 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 258
           EC++ + K GLNVDK+L        +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 470 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 300
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 299 LLKS 288
           LL S
Sbjct: 707 LLAS 710


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 441 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 554
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 9   DRVTSPSFFSENFDGGESEILNMGTVERSGDDH 107
           DR T    +++ + G ESE++N+G+    G  H
Sbjct: 117 DRYTDDHGWTQKYTGTESEVINLGSYNYLGFSH 149


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 447 WRDDTEEEELARAVQNAAITEGEEKK 524
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 447 WRDDTEEEELARAVQNAAITEGEEKK 524
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 447 WRDDTEEEELARAVQNAAITEGEEKK 524
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,589
Number of Sequences: 27780
Number of extensions: 252710
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)