Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c03
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 29 0.69
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 28 1.2
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.1
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 26 3.7
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 3.7
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 4.9
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 4.9
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 6.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 8.5
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 8.5
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 28.7 bits (61), Expect = 0.69
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 300 LLVALLGVSMSACAFASQPV 359
L VALLG+S+ C FAS P+
Sbjct: 132 LTVALLGMSLYVCGFASGPI 151
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 222 QRHENHVDTINAVGENSHAAQIKMRALLVA-LLGVSMSACAFASQPVELELDDDDVTQKL 398
+R N D I ++ + + I+ RA L+ + AFA P+E+E ++DV L
Sbjct: 98 RRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDL 157
Query: 399 SNVSFARRITK 431
+ F + +K
Sbjct: 158 HFICFVKGKSK 168
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 529 DCFDITAISKSKDVTAVRNALDFPFPITSRIVGFV 425
D D TAI KS +V N LD P P+T+ I FV
Sbjct: 448 DHTDFTAIVKSY-FESVDNPLDIPKPLTNTINKFV 481
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 601 SEAASKATTNRAGAASHRAPRRHHD 527
+EAA+KATT A AA AP + D
Sbjct: 233 NEAAAKATTPAASAADAAAPGDYED 257
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 180 KMNSDSNFILNQIRQRHEN 236
K NS+ ++LN IR RH+N
Sbjct: 162 KFNSNFAYLLNTIRTRHDN 180
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 449 YWKWKIQCISDGSDILAFTYRCDVEAIVVAS 541
YWK KI C S GS+I + D ++ +
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGA 147
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 317 QQGYQKSTHLDLSGMRILADRVYGIYMIFVSLTNLIQ 207
++ YQ+S H +S +R +AD + G++ S T Q
Sbjct: 232 KKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQ 268
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 470 CISDGSDILAFTYRCDVEAIVVASRCSMACSTGSI 574
C SD +L +Y + E + S C + C+ S+
Sbjct: 118 CFSDYKKVLGSSYASEEERQLALSECHLRCAERSL 152
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 458 ISNNKPDRGLRNSSSETDVTQFLRDVI--VVQL*LDWLRGKSAGRHRNSQQGY 306
I NN+ + LRN++S+ ++ ++ I V+ L KS H NS+ Y
Sbjct: 841 IMNNRSEEFLRNAASQAEIVGANKERIQKTVENGSQLLDSKSKAIHSNSRSMY 893
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 206 FESD-SSETRKSCRYHKRGRREFACRSNQDACSSGSPAGSFYV 331
F+ D SS+ K+ RYH R R+ + + SGS G V
Sbjct: 637 FDLDFSSKPYKNLRYHSRALRDVSYHPSLPLFCSGSDDGDVQV 679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,396
Number of Sequences: 5004
Number of extensions: 46268
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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