Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b24
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    74   9e-14
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355...    27   9.8  
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826...    27   9.8  
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276...    27   9.8  
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112...    27   9.8  

>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 34/43 (79%), Positives = 37/43 (86%)
 Frame = +3

Query: 417 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAP 545
           SRED RK  ELEEARKAG APA VDE GK+INPHIPQY++SAP
Sbjct: 10  SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAP 52


>05_05_0046 -
           21834942-21835055,21835145-21835220,21835297-21835553,
           21835643-21835741,21835820-21836018,21836102-21836315,
           21836470-21836538,21836626-21836950,21837065-21837235,
           21837315-21837479,21837555-21838191,21838258-21838319,
           21838581-21838652,21839256-21839291,21839361-21839489
          Length = 874

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 109 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 222
           S   C   K   S N C+ FLM+K  +N + RK  ++C
Sbjct: 291 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 328


>04_04_1328 -
           32682087-32682200,32682290-32682365,32682442-32682698,
           32682788-32682886,32682965-32683163,32683247-32683460,
           32683615-32683683,32683772-32684096,32684211-32684381,
           32684461-32684625,32684701-32684814,32685228-32685336,
           32685403-32685464,32685726-32685797,32686401-32686436,
           32686506-32686634
          Length = 736

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 109 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 222
           S   C   K   S N C+ FLM+K  +N + RK  ++C
Sbjct: 153 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 190


>02_04_0664 +
           24826714-24826842,24826912-24826947,24827551-24827622,
           24827882-24827943,24828010-24828646,24828722-24828886,
           24828966-24829136,24829251-24829575,24829663-24829731,
           24829886-24830099,24830183-24830381,24830460-24830558,
           24830648-24830904,24830981-24831056,24831146-24831259
          Length = 874

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 109 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 222
           S   C   K   S N C+ FLM+K  +N + RK  ++C
Sbjct: 291 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 328


>01_06_1351 -
           36510599-36510712,36510802-36510877,36510954-36511210,
           36511300-36511398,36511477-36511675,36511759-36511972,
           36512127-36512195,36512283-36512607,36512722-36512892,
           36512972-36513136,36513212-36513848,36513915-36513976,
           36514237-36514308,36514912-36514947,36515017-36515145
          Length = 874

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 109 SYTICVLKKIDTSNNLCLQFLMLK*FKNKKDRKDIVSC 222
           S   C   K   S N C+ FLM+K  +N + RK  ++C
Sbjct: 291 SMPTCFPNKAQLSINGCIIFLMVKYLRNLQFRKVGITC 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,795
Number of Sequences: 37544
Number of extensions: 170174
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)