Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b22
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    54   1e-08
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.1  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.4  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.4  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
 Frame = +3

Query: 240 KNNYCFMTYMF-EYPQFVHLSMPENKIYPQYALFAYSEGRFTERARKMWFDGVPVLFIPG 416
           ++N C  +Y++  Y +FV       +   +Y+L+ Y E    E        G+P+LFIPG
Sbjct: 106 QDNGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLYREKSVEESDEP---SGIPILFIPG 162

Query: 417 NSGSHMQARSLASVALR---KALSGGYDYHF-------DYFAISYNEELSGLYGGVLQSQ 566
           N+GS+ Q R+ A+ A      A +   D          D+F + +NE+ S  +G  L  Q
Sbjct: 163 NAGSYKQVRAFAAQAAHVYANAYAEDADGTLNAGKLVPDFFVVDFNEDFSAFHGQTLLDQ 222

Query: 567 TRFAAACIEKIL 602
             +    I  IL
Sbjct: 223 AEYVNDAIPYIL 234


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 404  IHTRQFW*SHASKITGICGLKKSLVWRI*LPF*LLCHKL**GALRPL 544
            +H   F  +HAS +TG+  + K L+  + +   +L  K+   +L+P+
Sbjct: 902  LHNYFFAEAHASSVTGVLSITKELLLSVSIDQRILLWKVEGDSLKPI 948


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 243  NNYCFMTYMFEYPQFVHLSMPENKIYPQYALFAYSEGRFTE 365
            NN+  MT + E+  F+  S P   + PQY         FTE
Sbjct: 1238 NNFT-MTALMEFKTFLESSNPALYLKPQYLFSVQLASDFTE 1277


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 504 NQNGNHILQTRLFLRPQMPVILLA 433
           + N   +LQT + L PQ+PV +LA
Sbjct: 265 SNNVKLLLQTAITLEPQVPVSILA 288


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 562  VKQDLQLLV*KKYWDLYKENNYIKSVP 642
            VK  LQLL+    W+L+  +N + ++P
Sbjct: 1617 VKCTLQLLMLNCLWELFHSDNMLTNIP 1643


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 317 NFVFWHRQMHKLWIFKHI 264
           NF FW +++   W +KHI
Sbjct: 164 NFGFWDQRLGLEWTYKHI 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,612
Number of Sequences: 5004
Number of extensions: 53288
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)