Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b22
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    67   1e-11
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    29   3.2  
06_01_0788 - 5895600-5896378,5896519-5896846                           29   3.2  
06_01_0787 - 5889596-5890389,5890849-5891230                           29   3.2  
06_01_0794 - 5923191-5923299,5923977-5924655,5924754-5925102           29   4.2  
02_04_0645 + 24703102-24704598                                         29   4.2  
01_04_0023 - 15167281-15167906,15168217-15168390,15169648-151699...    29   4.2  
01_01_1050 + 8283589-8283782,8284551-8284814,8284897-8284912,828...    29   4.2  
06_01_0791 - 5910380-5911161,5911737-5912158,5912181-5912194           28   7.4  
06_01_0795 - 5929137-5929918,5930038-5930398                           27   9.7  
02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872     27   9.7  
01_01_0246 + 2020415-2021167                                           27   9.7  

>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
 Frame = +3

Query: 246 NYCFMTYMFEYPQFVHLSMPENKIYPQYALFAYSEG--RFTERARKMWFDGVPVLFIPGN 419
           N C MTYM  YP ++ +S P+N    +YALF Y EG  +          +GVPVLFIPGN
Sbjct: 34  NGCVMTYM--YPTYIPVSTPKNVSSDRYALFLYHEGWKQIDFHHHLSNLNGVPVLFIPGN 91

Query: 420 SGSHMQARSLASVALRKALSG 482
            GS+ Q RSLA+ + R   +G
Sbjct: 92  GGSYKQVRSLAAESFRAYQNG 112


>12_02_0995 + 25104303-25104486,25105164-25105275,25106466-25106554,
            25106635-25106703,25106784-25106913,25107073-25107231,
            25107364-25107736,25108070-25108182,25108429-25108624,
            25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 297  SMPENKIYPQYALFAYSEGRFTERARKMWFDGVPVLFIPGNSGSH-MQARSLASVALRKA 473
            SMP N   P Y +FA S+    ++  + + + +P  +   N  S  ++ RS +   L   
Sbjct: 1020 SMPNNSSTPDYGMFAQSDPYLFDQPEQYYDEEIPRFYNSLNGTSRGLRERSYSHFDLPSY 1079

Query: 474  LSGGYD 491
             +G +D
Sbjct: 1080 SNGQFD 1085


>06_01_0788 - 5895600-5896378,5896519-5896846
          Length = 368

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 474 LSGGYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKILGSV 611
           + G   Y  + F    + + +  YGG L+++ RFA   I+ ++G +
Sbjct: 170 IHGANGYLLEQFMKDSSNDRTDEYGGSLENRCRFAVEVIDAVVGEI 215


>06_01_0787 - 5889596-5890389,5890849-5891230
          Length = 391

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 474 LSGGYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKILGSV 611
           + G   Y  + F    + + +  YGG L+++ RFA   I+ ++G +
Sbjct: 188 IHGANGYLLEQFMKDSSNDRTDEYGGSLENRCRFAVEVIDAVVGEI 233


>06_01_0794 - 5923191-5923299,5923977-5924655,5924754-5925102
          Length = 378

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 474 LSGGYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKILGSV 611
           + G + Y  D F      + +  YGG L+++ RFA   I+ ++  V
Sbjct: 177 IHGAHGYLLDQFMKDSANDRTDEYGGNLENRCRFAVEVIDAVVAEV 222


>02_04_0645 + 24703102-24704598
          Length = 498

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 483 GYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACI 590
           GYDY F  F  ++    +G+  G +  +TRF+A  I
Sbjct: 117 GYDYDFFLFQWAFAIAAAGITSGSIAERTRFSAYLI 152


>01_04_0023 -
           15167281-15167906,15168217-15168390,15169648-15169907,
           15170024-15170085
          Length = 373

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +3

Query: 456 VALRKALSGGYD---------YHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKILGS 608
           +A R A+  G+D         Y  D F      + +  YGG ++++ RFAA  I  + G 
Sbjct: 157 IAARNAIEAGFDGVEIHGANGYLIDQFMKDSVNDRTDAYGGGIENRCRFAAEVITAVAGE 216

Query: 609 V 611
           +
Sbjct: 217 I 217


>01_01_1050 +
           8283589-8283782,8284551-8284814,8284897-8284912,
           8285032-8285389,8285860-8286050,8286108-8286197,
           8287399-8287596
          Length = 436

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 128 SFQNETNEINTFKYFSRIVTIISSGISFRSFKFAFQRQK*LLFHDIYV*ISTICAS-VYA 304
           S QNE  + N FKYF       +    F S  F  Q      F  + + ++ +     ++
Sbjct: 293 SMQNEILKSNAFKYFDERNKFAAFADLFASVNFTAQHGN---FQRLLLDLTRLAQDFFFS 349

Query: 305 RKQNLSTICLIC 340
           R+ +L T C +C
Sbjct: 350 RRPDLETFCDVC 361


>06_01_0791 - 5910380-5911161,5911737-5912158,5912181-5912194
          Length = 405

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 474 LSGGYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKILGSV 611
           + G + Y  D F        +  YGG L+++ RFA   I+ ++  V
Sbjct: 206 IHGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFAVEVIDAVVAEV 251


>06_01_0795 - 5929137-5929918,5930038-5930398
          Length = 380

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 474 LSGGYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKILGSV 611
           + G + Y  + F      + +  YGG L+++ RFA   I+ ++  V
Sbjct: 181 IHGAHGYLLEQFMKDSANDRTDEYGGSLENRCRFAVEVIDAVVAEV 226


>02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872
          Length = 489

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 528 PHYSLWQSNQNGNHILQTRLFLRPQMPVILLA 433
           P++  W+ NQ GN + +  + L PQ+ + L A
Sbjct: 204 PNWGAWEDNQGGNQVDEHLMPLVPQLLIDLQA 235


>01_01_0246 + 2020415-2021167
          Length = 250

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 322 HNMPYLHIVKADSQREQEKCGLTEYQC 402
           HN+ + +  KA    +Q+K GL E +C
Sbjct: 134 HNLVFYNCTKAPPAEQQQKLGLVETRC 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,947
Number of Sequences: 37544
Number of extensions: 297340
Number of successful extensions: 611
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)