Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12b22
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74043-4|CAA98541.1| 733|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z68303-2|CAA92641.2| 428|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z72506-2|CAA96621.1| 434|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z72506-1|CAA96618.1| 432|Caenorhabditis elegans Hypothetical pr... 28 5.0
U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical pr... 28 6.6
AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidas... 28 6.6
Z82052-8|CAD89751.2| 325|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 8.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 8.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 8.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 8.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 8.7
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 27 8.7
>Z74043-4|CAA98541.1| 733|Caenorhabditis elegans Hypothetical
protein T19B10.8 protein.
Length = 733
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/120 (31%), Positives = 63/120 (52%)
Frame = +3
Query: 240 KNNYCFMTYMFEYPQFVHLSMPENKIYPQYALFAYSEGRFTERARKMWFDGVPVLFIPGN 419
+ N C MTYM+ +F+ + + + +Y+ Y+EG + +PVLFIPG+
Sbjct: 46 QENSCSMTYMYRKLEFLEIPLLTPQS-DKYSFSVYNEGHRWWNRSTIEAGQIPVLFIPGS 104
Query: 420 SGSHMQARSLASVALRKALSGGYDYHFDYFAISYNEELSGLYGGVLQSQTRFAAACIEKI 599
GS Q RSLASV K + F +FA+ ++EE++ + G +++ Q + I KI
Sbjct: 105 QGSGKQIRSLASVMQNKTEMRYAPFSFRFFAVDFDEEMTFMNGHIVKRQIEYVMKAIRKI 164
>Z68303-2|CAA92641.2| 428|Caenorhabditis elegans Hypothetical
protein ZK809.1 protein.
Length = 428
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +1
Query: 388 TEYQCYSYQAILVVTCKQDHWHLWP*EKPCLEDMITILITLP*AIMRSSQAFMEEFYKV 564
T+Y+CY + I+V CK D+ + P I L+ LP M S A +EEF++V
Sbjct: 163 TDYKCYDHNRIIVQMCKDDYINGSKINVPHFTPSI-YLVQLP--KMDSVDA-VEEFWRV 217
>Z72506-2|CAA96621.1| 434|Caenorhabditis elegans Hypothetical
protein F07A5.1b protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 567 FDFV-ELLHKGLRAPHYSLWQSNQNGNHILQTRLFLRPQMPVILLACDYQ 421
FD + + +H RAP +S + Q IL + R Q IL+ C+YQ
Sbjct: 226 FDLLGKFIHPTPRAPEFSSFSDKQRFAAILTDGSYNRFQYFPILVGCEYQ 275
>Z72506-1|CAA96618.1| 432|Caenorhabditis elegans Hypothetical
protein F07A5.1a protein.
Length = 432
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 567 FDFV-ELLHKGLRAPHYSLWQSNQNGNHILQTRLFLRPQMPVILLACDYQ 421
FD + + +H RAP +S + Q IL + R Q IL+ C+YQ
Sbjct: 226 FDLLGKFIHPTPRAPEFSSFSDKQRFAAILTDGSYNRFQYFPILVGCEYQ 275
>U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical
protein C14C11.3 protein.
Length = 596
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -1
Query: 403 NTGTPSNHIFLALSVNLPSLYANKAYCG 320
N T +++IF AL+ N P+++A+ AY G
Sbjct: 337 NIITLNDYIFSALAENFPTMWASSAYKG 364
>AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidase
protein.
Length = 596
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -1
Query: 403 NTGTPSNHIFLALSVNLPSLYANKAYCG 320
N T +++IF AL+ N P+++A+ AY G
Sbjct: 337 NIITLNDYIFSALAENFPTMWASSAYKG 364
>Z82052-8|CAD89751.2| 325|Caenorhabditis elegans Hypothetical
protein T25E12.13 protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 350 FTICK*GILWINFVFWHRQMHKLWIFKHICHETIVIFVAEMQI*NS*K 207
F K ILWI F+F+ M ++IF HI +TI + + + I NS K
Sbjct: 88 FKSAKRMILWIPFIFF---MASIYIF-HILQQTIHLLLFLLAIINSLK 131
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 243 NNYCFMTYMFEYPQFVHLSMPENKIYPQYALFAYSEGRFTERARKMWFDGVPVL---FIP 413
+ +C Y+F +F MPE I A Y G A FDGV +L F
Sbjct: 62 SRFCLFVYLFILARFSLKKMPEEYIMSSKAC-VYVLGGAANTATLFDFDGVYILDGGFAE 120
Query: 414 GNSGSHMQARSLASVAL 464
+ G R +++V L
Sbjct: 121 KSPGFVAHVRDVSAVLL 137
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 354 RFTERARKMWFDGVPVLFIPGNSGSHMQARSLASVALRK 470
R E K+W DG +L+I GN SH Q A L++
Sbjct: 1546 RCPEGQTKLW-DGYSLLYIEGNEKSHNQDLGHAGSCLQR 1583
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 354 RFTERARKMWFDGVPVLFIPGNSGSHMQARSLASVALRK 470
R E K+W DG +L+I GN SH Q A L++
Sbjct: 1545 RCPEGQTKLW-DGYSLLYIEGNEKSHNQDLGHAGSCLQR 1582
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 354 RFTERARKMWFDGVPVLFIPGNSGSHMQARSLASVALRK 470
R E K+W DG +L+I GN SH Q A L++
Sbjct: 1545 RCPEGQTKLW-DGYSLLYIEGNEKSHNQDLGHAGSCLQR 1582
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 354 RFTERARKMWFDGVPVLFIPGNSGSHMQARSLASVALRK 470
R E K+W DG +L+I GN SH Q A L++
Sbjct: 1546 RCPEGQTKLW-DGYSLLYIEGNEKSHNQDLGHAGSCLQR 1583
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 354 RFTERARKMWFDGVPVLFIPGNSGSHMQARSLASVALRK 470
R E K+W DG +L+I GN SH Q A L++
Sbjct: 1582 RCPEGQTKLW-DGYSLLYIEGNEKSHNQDLGHAGSCLQR 1619
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 354 RFTERARKMWFDGVPVLFIPGNSGSHMQARSLASVALRK 470
R E K+W DG +L+I GN SH Q A L++
Sbjct: 48 RCPEGQTKLW-DGYSLLYIEGNEKSHNQDLGHAGSCLQR 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,442
Number of Sequences: 27780
Number of extensions: 294825
Number of successful extensions: 643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -