Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b22
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 228 ANLKLLKDIPEE--IIVTILEKYLNVLISLVS 139
           A LK+ KDIPEE  +++ + +   N L   VS
Sbjct: 314 AALKIAKDIPEEKRMVIILPDGIRNYLTKFVS 345


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 540 GLRAPHYSLWQSNQN 496
           G R PHY +W +  N
Sbjct: 909 GARKPHYDIWGNTVN 923


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 77 FLVSILSCFQSITKL 33
          FLV + SCFQ++ +L
Sbjct: 46 FLVQLHSCFQTMDRL 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 499 KW*SYPPDKAFLKATDA 449
           +W   P DKAF + +DA
Sbjct: 680 RWILEPTDKAFAQGSDA 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,991
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)