Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b20
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    48   9e-07
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    29   0.57 
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   3.0  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   5.3  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   7.0  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    25   7.0  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   9.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   9.2  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +1

Query: 424 MSYMLGHLHNGWQVDQAILSEEDRVVV 504
           MSY L HLH+GW VDQAILSE++R+VV
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVV 27


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 126 FHRTFFLL*SNKKDNACSKLFEHTSIENVNS--DEKQNV 236
           F R FFLL  +++ N C K   +T I ++NS  D+K+++
Sbjct: 76  FVRLFFLLGDSERVNLCIKRLIYTFIGSINSVIDKKEDI 114


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 308 QILILFCSLKFAFHI*DIPKLFYSHILFLVTVHVFY 201
           Q+++L C L +  +  DIP+ F  H+   +T  + Y
Sbjct: 203 QVILLECKLFYDLNCQDIPEFFEDHMSEFMTAFLNY 238


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 248 LFYSHILFLVTVHVFYRSVFKKFRA 174
           +F+ ++  ++  + F+R VFKK++A
Sbjct: 173 VFHGYLTSILEAYEFFRGVFKKYKA 197


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 300 DIILLTEICLSHLRHSKVI 244
           DI+LL+++  +H  HSK+I
Sbjct: 157 DILLLSDLVFNHTEHSKLI 175


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 567 IIFSLQILNLRFLHSMNLVKTH 502
           ++FSLQ+L+ RF  ++N   +H
Sbjct: 216 LVFSLQVLSFRFKGAINEASSH 237


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 312 SGPTTRLYFAHSNSNFQKKEYRNNRLFEIIRKVVYLQNELYARTSTQWLASRSGHSIRRR 491
           SGP  R+ F + + N+     R+N+    + K +YL  +   +     L  R   S   R
Sbjct: 245 SGPYRRVAFTYQDENYYYISGRSNKDIGELSKKMYLMYKQAYKDLNASLRERRRRSTSNR 304

Query: 492 PCSG 503
             SG
Sbjct: 305 RNSG 308


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 267 HLRHSKVILFSHFVSRHCSR 208
           HLR +K I+ ++FV + CSR
Sbjct: 217 HLRSNKSIVVNNFVGQLCSR 236


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 251 KLFYSHILFLVTVHVFYRSVFKKF 180
           + +Y H +F+ T H F+ ++++ F
Sbjct: 465 RFYYGHYVFVNTCHNFFLTLYQSF 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,472
Number of Sequences: 5004
Number of extensions: 48969
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)