Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b20
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.82 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 245 ITLECLRCERQISVSKIISIFVQWSYNTIIFC 340
           +TL  +  E  I  + +I+ +  WSYN + +C
Sbjct: 86  LTLGYVTREVSIDGNPLIAPYPNWSYNDVKYC 117


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 567  IIFSLQILNLRFLHSMNLVKT 505
            II   Q+LN++ LH + ++ T
Sbjct: 1241 IILPSQLLNIKTLHGLKVIPT 1261


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 342 HSNSNFQKKEYRNN 383
           H+N+N+    Y NN
Sbjct: 324 HNNNNYNNNNYNNN 337


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 68  SMSKFTNTDFYQVIKYLKKNH 6
           S+S  +NT F  ++K+LK+ +
Sbjct: 331 SISVESNTMFINILKFLKQKY 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,920
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)