Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b18
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    28   2.9  
09_02_0539 - 10408398-10409552                                         27   5.0  

>12_01_1024 -
           10467644-10469274,10469424-10469482,10469820-10470357,
           10470975-10471666,10471912-10472062,10473797-10473864,
           10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 297 TCGYXISKNFTKDLECKFP 353
           TC Y    N+TK + CK+P
Sbjct: 791 TCVYNYMSNYTKGINCKYP 809


>09_02_0539 - 10408398-10409552
          Length = 384

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 24  VNCVTLFLMMNKMVGWYLCY 83
           +NCV L L +N  V WY CY
Sbjct: 176 INCVVLVLSLNDTVIWY-CY 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,155,613
Number of Sequences: 37544
Number of extensions: 94749
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)