Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b18
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   1.5  
U53339-1|AAA96197.3|  199|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = -1

Query: 324 NFY*XCSHMLKISRIIV*SQLRTALLM*LSVFFNIYFSFNYLIFCATCSIVAICNNTA 151
           NFY     ML++   I+ S L TA+++ LS    ++ + +Y++F   C+++++   TA
Sbjct: 665 NFY--SDQMLELQSTIL-SSLGTAIIL-LSAICIMFIAESYIVFWVVCTLISMDIGTA 718


>U53339-1|AAA96197.3|  199|Caenorhabditis elegans Hypothetical
           protein F58A6.2 protein.
          Length = 199

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 21  LVNCVTLFLMMNKMVGWYLCYKIITF*QC 107
           LV C T+F++  +M+G+Y+  K  T+ QC
Sbjct: 132 LVVCPTIFMI--QMIGFYVVIKCRTYIQC 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,946,271
Number of Sequences: 27780
Number of extensions: 106631
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)