Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b18
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 87  FCSISTNRPSYSSLKI 40
           +C+  TN   YS LK+
Sbjct: 218 YCNSKTNTGEYSCLKV 233


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 87  FCSISTNRPSYSSLKI 40
           +C+  TN   YS LK+
Sbjct: 218 YCNSKTNTGEYSCLKV 233


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 336 LECKFPIKXFPRWK 377
           ++ K PIK F +WK
Sbjct: 437 MQPKQPIKLFEQWK 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,109
Number of Sequences: 438
Number of extensions: 1300
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)