Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b15
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   4.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   5.7  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   5.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   7.5  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    25   9.9  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   9.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.9  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 244 SVTSSGVS--ENIACGSMTTDEEEID 315
           S +SSG S   +I CGS  T++EE+D
Sbjct: 29  SGSSSGASLLVDIMCGSKETEDEEVD 54


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 94  HFFLLNLFI-WFYSFFFL*LYCNR 26
           H F +  F  WF+ FFF   +C R
Sbjct: 67  HTFTIEAFFYWFFFFFFFFSHCRR 90


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 353 STELTLEVALPTGSISSSSVVMLPQAIFSLTPEDVTENRLSSKLY 219
           + ++TL+  + TG +++   V+    I+     + TEN  S +LY
Sbjct: 48  TNKITLDNPVYTGFLNTQGRVLFDSFIYPKVSNNGTENERSDELY 92


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 343 NSVDP-GQFATKIDQRYGGQYLTPDQLPEFCAQL 441
           N +DP  Q    ++ R GG Y+ P +L    AQL
Sbjct: 74  NELDPKAQIKKLMETRSGGTYIPPAKLKALQAQL 107


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 154 PPLFHPNFY 128
           PPLFHPN Y
Sbjct: 79  PPLFHPNVY 87


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 378 RPKVWRTIPYSRSAAGILRSASSFSGSNQ 464
           RPKV   +P   SA   +    S+SG+NQ
Sbjct: 257 RPKVLILLPTRNSAFEFINLLISYSGTNQ 285


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 158 VGGSPVSSAGFSVDSEVTITSTTCLINDFQLHL 256
           + GSP  + G  VDS+  +T +T   + +  H+
Sbjct: 212 ITGSPKDAIGLFVDSQGNVTRSTLTFSFYPKHV 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,356
Number of Sequences: 5004
Number of extensions: 40710
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)