Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b14
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    37   0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.11 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    28   0.80 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   1.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   3.2  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    26   4.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   4.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   5.7  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   9.9  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
 Frame = -1

Query: 437 PRSPLSPFSPGNPGIPEGP*SPFCPGAPN----PVAPFSPRXXXXXXXXXXXXXXXXXXX 270
           P+ P++P +P  P +P+ P +P  P AP+    PVAP +P                    
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV 634

Query: 269 XXXPAKXXXXXXXXXXXXXXXXXXXXXPNCPGSPGRP*SPFCPGAPGNPGLPCFP 105
              PA                      P+ P  P  P  P  P  P  P +P  P
Sbjct: 635 PQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVP 689



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 34/135 (25%), Positives = 43/135 (31%), Gaps = 4/135 (2%)
 Frame = -1

Query: 401 PGIPEGP*SPFCPGAPN----PVAPFSPRXXXXXXXXXXXXXXXXXXXXXXPAKXXXXXX 234
           P +P+ P +P  P AP+    P AP +P                       PA       
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEA 571

Query: 233 XXXXXXXXXXXXXXXPNCPGSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRP 54
                          P+ P  P  P  P  P  P  P  P  P VP  P  P +  P  P
Sbjct: 572 LSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAV--PVVP 629

Query: 53  VGPIGPVSPFSPIRP 9
             P  P  P +P+ P
Sbjct: 630 EAPSVPQPPAAPVVP 644


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 328 RGEKGATGFGAPGQKGDQGPSGIPGLPGEKGDKGDRGLHGLPGRTGPIGPPG-QKGDRGY 504
           RG  G  GFG  G      P G  G  G  G  G+   HG  G  G  GP G + G  G+
Sbjct: 183 RGHNGG-GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG-GPGGFEGGPGGF 240

Query: 505 PGRPG 519
            G PG
Sbjct: 241 GGGPG 245


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 39  SYRSYRPTRLNYKRRKRLTRNSWKTW 116
           S+R    T+ NY    RL   SW+TW
Sbjct: 314 SWREITKTKANYDNGIRLENASWRTW 339


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 77   KEKKAYQELMENMGGQDYLVLQDKKAI-KVY 166
            K+KK Y++  EN+G  D L + D + I +VY
Sbjct: 1271 KQKKYYEQYKENLGFFDSLCIGDNECITRVY 1301


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 303  WYYWGKRRSRREGGHWVWCT 362
            +YY G  +     GHWVW T
Sbjct: 1071 FYYDGPNKDGLASGHWVWGT 1090


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 331 GEKGATGFGAPGQKGDQG 384
           G  GA+G G+ G++GD+G
Sbjct: 171 GAGGASGIGSSGRRGDRG 188


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 394 IPGLPGEKGDKGDRGLHGLPGRTGPIGPPGQKGDRGYPGR 513
           +PG+PG     G  G +     +    PPG     GY  R
Sbjct: 548 MPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGYSNR 587



 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 179 PGSPGRP*SPFCPGAPGNPGLP 114
           PG P  P  P  PGA   PG P
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAP 561


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 267 WWPCQTFITLITLLSFF 217
           WWPC+T +  + L   F
Sbjct: 83  WWPCKTTVVCLILFLLF 99


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 323 EIEERRGPLGLVHQGKKVIKVPQVYQDY 406
           +IE R  P      GK  +K P +Y+DY
Sbjct: 34  DIERRSNPE--FFNGKSPLKTPSIYKDY 59


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 478 ADQSVRFDQVIHVIHDLLYHLSHQV 404
           +DQ  +FD    +I D++Y LS+++
Sbjct: 7   SDQVAKFDVSHKIIEDIVYSLSNRI 31


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 EIEERRGPLGLVHQGKKVIKVPQVYQDY 406
           EIE+++ P      GK   K P+VY++Y
Sbjct: 68  EIEKKQNPE--FFDGKNTSKTPEVYKEY 93


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 419 PFSPGNPGIPEGP*SPFCPGAPNPVAPFSPR 327
           P  P + G+P  P S   P   N ++P+S R
Sbjct: 31  PTPPHDDGLPSIPRSTALPNLSNRLSPYSHR 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.144    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,076
Number of Sequences: 5004
Number of extensions: 42233
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)