Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b14
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    33   0.003
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   3.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   3.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 355  GAPGQKGDQGPSGIPGLPGEKGDKGDRGLHGLPGRTGPIGPPGQKGDRGYPGRPGLQ-GE 531
            G  G +  QG  G+ G+ G +G +G +G+ G+PG    +     +G +G     G+Q G+
Sbjct: 843  GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLLQGVQQVFGQGVQGMNVPYGMQRGQ 902

Query: 532  QG 537
             G
Sbjct: 903  SG 904



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +1

Query: 367 QKGDQGPSGIPGLPGEKGDKGDRGLHGLPGRTGPIGPPGQKGDRGYPGRPGLQGEQGMKG 546
           Q G Q  S + GL G +G +      G+ G     G  G +G +G  G  G+QG QG+ G
Sbjct: 823 QSGQQQQSVLQGL-GVQGVQ-----QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 173 FRDNWVGLVYLGSQVKKD 226
           + DNW  ++YLG+ V  D
Sbjct: 312 YMDNWKMMMYLGTPVMPD 329


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 319 KGDRGEKGATGFGAPGQKGDQGPSGIPGLPGEKGDKGDR 435
           +G  G +G TGF    + GD          G + ++ DR
Sbjct: 92  RGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDR 130


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 82  EKGLPGTHGKHGRPGL 129
           + GL G HG HG  GL
Sbjct: 131 QTGLHGLHGLHGLHGL 146


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
 Frame = +2

Query: 332 ERRGPLGLVH-QGKKVI---------KVPQVYQDYLVRKVIKEIVDYMDYLVEP 463
           E+R P+G    +GKK+I         +    +Q  L RK      DY+DY + P
Sbjct: 179 EKRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINP 232



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 5   LLGEWEKKVTL 37
           LLGEWEK+  +
Sbjct: 174 LLGEWEKRAPM 184


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
 Frame = +2

Query: 332 ERRGPLGLVH-QGKKVI---------KVPQVYQDYLVRKVIKEIVDYMDYLVEP 463
           E+R P+G    +GKK+I         +    +Q  L RK      DY+DY + P
Sbjct: 179 EKRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINP 232



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 5   LLGEWEKKVTL 37
           LLGEWEK+  +
Sbjct: 174 LLGEWEKRAPM 184


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  GEKGLPGTHGKH 114
           G  G+PG HG H
Sbjct: 333 GPPGVPGDHGDH 344



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 391 GIPGLPGEKGD 423
           G PG+PG+ GD
Sbjct: 333 GPPGVPGDHGD 343


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  GEKGLPGTHGKH 114
           G  G+PG HG H
Sbjct: 333 GPPGVPGDHGDH 344



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 391 GIPGLPGEKGD 423
           G PG+PG+ GD
Sbjct: 333 GPPGVPGDHGD 343


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  GEKGLPGTHGKH 114
           G  G+PG HG H
Sbjct: 272 GPPGVPGDHGDH 283



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 391 GIPGLPGEKGD 423
           G PG+PG+ GD
Sbjct: 272 GPPGVPGDHGD 282


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 97  GTHGKHGRPGLPG 135
           G H  HG PG+ G
Sbjct: 330 GVHNLHGMPGILG 342


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 5   LLGEWEKKVTL 37
           LLGEWEK+  +
Sbjct: 174 LLGEWEKRAPM 184


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +3

Query: 270 SCRSNWTTWNSW 305
           S   +W  WN W
Sbjct: 691 SVNKSWNKWNDW 702


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +3

Query: 270 SCRSNWTTWNSW 305
           S   +W  WN W
Sbjct: 691 SVNKSWNKWNDW 702


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +3

Query: 270 SCRSNWTTWNSW 305
           S   +W  WN W
Sbjct: 691 SVNKSWNKWNDW 702


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 394 IPGLPGEKGDKGDRGLHGLPGRTGPIGP 477
           + G P    DK     +G+P    PIGP
Sbjct: 47  VRGFPRTVLDKEVHVFYGIPFAKPPIGP 74


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 394 IPGLPGEKGDKGDRGLHGLPGRTGPIGP 477
           + G P    DK     +G+P    PIGP
Sbjct: 47  VRGFPRTVLDKEVHVFYGIPFAKPPIGP 74


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 367  QKGDQGPSGIPGLPGEKGDKGDRGLHGLP 453
            QK    P GIPG  G K      G+  LP
Sbjct: 1129 QKPFTSPGGIPGPNGIKMPSFMEGMPHLP 1157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.144    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,083
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 34
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.0 bits)