Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b13
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 277 DLRFWASDLL*PKLHVINSSRGSLKLTYNS 188
           D  +W  D+L   +H+ + S GS ++  NS
Sbjct: 162 DHTWWPYDILNCTIHIASWSHGSNEIKLNS 191


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 70  TIYFVHCHHNSNFLXFFF 17
           T  +V CH+  N   FFF
Sbjct: 125 TYQYVQCHYKQNPEKFFF 142


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 62  VNSVTADFEVFGKVQGVFFRKFTQKKALELGLK 160
           +NS+T + +V   V+         KKA  +G K
Sbjct: 866 INSITVEKDVINDVKTQITTNTPAKKATNIGGK 898


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,262
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)