Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b06
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical...    32   0.26 
Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    27   9.6  

>AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical
           protein C18E3.1 protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 222 VHLWRFHYNKLPRQDLCLYDHKVSDPLF 139
           +HL R    K   QDLC +D K+ +PLF
Sbjct: 63  IHLDRSKMRKAVHQDLCTHDQKILEPLF 90


>Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical
           protein ZK899.8j protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 442 IRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDNFNIFQSLP 269
           +R++SLF   C  T+   HSD       +A +G KS +  +SP+  +   +     LP
Sbjct: 61  VRVSSLFGEYCRYTVNTSHSDSGTSRIASA-LGGKSSS-QESPSLRIKARWQSVHILP 116


>AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical
           protein T05H4.7 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 72  HVRYISQFKIQRTDCVP--YGTPRKIKDPKLCGHK 170
           H  + + +K Q  DC P  YG P    DPKL  H+
Sbjct: 429 HPDWGNMWKSQSCDCAPAPYGGPLPYYDPKLYPHE 463


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +1

Query: 109 LTVCHTERRAK*RIRNFVVIKTKVLSWEFIIMKTPKVNLPFLLQVHKSMIENPVVNFGK 285
           LT C TE   K  IRN +    K  +  F+  K   V L  LL    S ++   +N GK
Sbjct: 351 LTYCGTEDGKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGK 409


>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -3

Query: 228 WQVHLWRFHYNKLPRQDLCLYDHKVSDPLFCAAFRMAHSQYVVF*IEKYIEHVSKLDFCE 49
           W   L+  H N++P  ++  YD   S P+  A       Q + F IEK  +H+  LD  +
Sbjct: 337 WIFRLFSKHKNQIPLAEM-EYDDLRSSPVDLA-------QELRFCIEKVRKHLEDLDSKD 388

Query: 48  KNNIL 34
           KN ++
Sbjct: 389 KNELI 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,951
Number of Sequences: 27780
Number of extensions: 321378
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)