Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b05
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    28   1.3  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   1.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.0  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   5.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   7.0  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   9.2  

>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 564 KVSNKTNKNITQHESVSNANRRAIA 638
           ++S  TN NIT  ES SN+N + I+
Sbjct: 288 EISQNTNANITVEESDSNSNEKFIS 312


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 507 TNVYESTENFHFNGDEPTEKVSNKTNKN 590
           + +Y +  +F +  D  T  VSN TNK+
Sbjct: 334 SQMYSAASHFRYRSDPSTRHVSNSTNKS 361


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 443 YVHSEGVSVR*IARETSRVGEYKCLRI 523
           Y+HS+G++ R I  E   + EY  LRI
Sbjct: 574 YIHSQGIAHRDIKPENILISEYGVLRI 600


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 381 FCRPGPLDGMFCIHWLALCKDKGHRRR 301
           F +     G+F +HW  +  D+GH  R
Sbjct: 636 FSQQSHSSGLFSVHWFRVVLDEGHNIR 662


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 601 CCVMFLLVLLETFSVGSSPLKWKF 530
           C V+F +V L   ++ SSP KW +
Sbjct: 133 CYVLFAIVCLLAAALTSSPYKWAY 156


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 501 VNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRR 629
           +N+N  +  EN HF  D+  +   N +N+ + + + +     R
Sbjct: 110 INSNSNKGKENMHFVLDDNGDSKGNASNQQVERDDKLDMETTR 152


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 486 RQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSN 617
           RQ+ +VN N  +    +H     PTE   N T   + ++ESV N
Sbjct: 279 RQSSVVNNNSVQQPVAYHAFVQSPTE---NGTLPQLPKNESVVN 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,911
Number of Sequences: 5004
Number of extensions: 53945
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)