Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b05
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 486 RQAELVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRR 629
           R  ++VN +      NF   G    E + N    N  Q++++ N N +
Sbjct: 382 RMQKIVNDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDNIQNTNNQ 429



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 498 LVNTNVYESTENFHFNGDEPTEKVSNKTNKN-ITQHESVSNANRR 629
           ++  NV E   N H   +   + + N  N+N   Q  +  NAN +
Sbjct: 400 ILGANVKELIRNTHCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQ 444


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 504 NTNVYESTENFHFNGDEPTEKVSNKT 581
           N+N+ E  EN  F+ D+P    S  T
Sbjct: 6   NSNMTEFEENVSFDIDDPDFAPSKNT 31


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 467 LKHPLNVHKCF 435
           ++H L++HKCF
Sbjct: 552 VRHNLSLHKCF 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,963
Number of Sequences: 438
Number of extensions: 3811
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)