Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b04
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.7  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   1.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   1.7  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   3.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   4.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   4.0  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   7.0  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   7.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   7.0  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   9.3  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.3  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   9.3  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    25   9.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   9.3  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 503 FMXNVSPRFFINGSGSVCNLLNNSSPYTLFIS 408
           F  NV+PR FI    SVC ++ N  PY+  +S
Sbjct: 394 FPSNVNPRGFICAEKSVCRVVEN--PYSNTVS 423


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 316 SREMRVRHDPQYFKQ----NCYTNGKYHTDALNDSDMKSVYGEE 435
           S+E++   DPQYF +      Y NG  + ++LN SD   +  +E
Sbjct: 435 SKELKAPPDPQYFTEKTGATTYVNG--NDESLNVSDFPQIVEQE 476


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 228 PHRPSPDIRKYFNSVSCAT*KKFLENEFFEP*NARQTRSAVFQTKLLYQ 374
           PH PS D+  Y NS  C T    +E +F     A Q  +++  T+L  Q
Sbjct: 786 PHCPSVDL--YINSPQCGTLHSGVEYKFNVSAYACQPSTSISNTRLAIQ 832


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 302 FEKFLLRCTRYTIKVFSYIRRRSVRVSATL 213
           + KFL + T+ T++V+S  R  SVR SA +
Sbjct: 311 YRKFLKQFTQATVEVWSSTRDDSVRFSAVV 340


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 394 ALNDSDMKSVYGEELFNKLHT 456
           AL+DSD++S Y EEL  K  T
Sbjct: 299 ALDDSDLESAYNEELEMKKDT 319


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 362 FCLKYCGSCLTRISRLKKFIFEKFLLRCTRYTIK 261
           +C ++C   +  I  +   IFE F + C+   I+
Sbjct: 764 YCFEFCDGQIPNIQNINMSIFEAFPIACSLQQIE 797


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 220 ADTLTDLRLI*ENTLIVYRVQRKRNFSKMNFLSR-EMRVRHDPQYFKQNCYTNGKYHTDA 396
           AD   D  ++ ++  I +       FS ++F S  E  + +D   F+ + Y      TDA
Sbjct: 94  ADENVDANVLKDSASIRHVSLPDAKFSMVSFSSNGEFVIAYDFVSFELSVY-----ETDA 148

Query: 397 LNDSDMKSVYGEELFNKLHTLPDPLMKNL 483
           L  +   S+Y     + +  LP+P + NL
Sbjct: 149 LLKNSATSIYKAVFPDLVQVLPNPEINNL 177


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 363 ILFEILRIVSDAHFTAQKIHFREISFTLHTIHY*SIFLYQAKVCEGICNTFHKTQH 196
           +L  + + +S  H   ++I    +   L +IHY  +F+     C  +C+ F K ++
Sbjct: 521 LLHHLRKDISYVHRLPEEIRQTVLDALLGSIHYSFLFVSFMFFCAFVCSMFIKNRN 576


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 111  LTRNNTNKYVKTLNCVPNKDLFNLNSDC 194
            L +NN N +V+    VPN DL   ++ C
Sbjct: 3270 LDKNNNNDFVRLERFVPNVDLVRGHTMC 3297


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 421 HSSYRYHSGHPCGIFRWY 368
           H +  +H+G  CGI+ W+
Sbjct: 238 HLTNTHHNGFECGIYYWH 255


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = +1

Query: 262 LIVYRVQRKRNFSKMNFLSREMRVRHDPQYFKQNCYTNGKYHTDALNDSDMKSV 423
           L+  +V + + F+  N       ++H+P  F          H D L  S++  +
Sbjct: 536 LVCNKVWQTKRFNPANTSITNYEIKHEPAAFDLRGGPRSAEHVDILGHSELNEI 589


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 51  MEPLXDFNFETNKSTSNKDFLTRNNT 128
           M+ L DFNF    + SN++  + NN+
Sbjct: 1   MDDLLDFNFYDKSTPSNQNNYSNNNS 26


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 524 TFSPSVIFMXNVSPRFFINGSGSVC 450
           T+SPS+     + PR FIN +G++C
Sbjct: 119 TYSPSLDAPRPIQPRGFIN-TGNIC 142


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 409 DMKS-VYGEELFNKLHTLPDPLMK-NLGDTLXMNMT 510
           D+KS + G  +F  LH++P P +K  L + L ++ T
Sbjct: 389 DVKSKIIGPAIFKYLHSMPKPSVKEELQENLLVSST 424


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 YVKTLNCVPNKDLFNLNSDCCVAFCG 212
           Y+KTLN  P  ++FNL +    +F G
Sbjct: 379 YLKTLNDSPCNEVFNLATKKLCSFSG 404


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
 Frame = +3

Query: 6   QNGRTIKTCNTFI----VTMEPLXDF--NFETNKSTSNKDFLTRNNTNKYVKTLNCVPNK 167
           +NGR  KTCN F     V  +P        ++N    +K      NTN    +++     
Sbjct: 18  ENGRPCKTCNIFSSFRNVAQQPNSSTVPEVKSNTQLESKQSSIDCNTNAIPDSVSFPRLP 77

Query: 168 DLFNLNSDCCVAFCGKCCRYPHRPSP 245
           D+  L              +P  P+P
Sbjct: 78  DVAELGRSTWTFLHAMAANFPKNPTP 103


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 ISRLKKFIFEKFLLRCTRYTIKVFS 252
           +SRLK    E+F+LRCT +   V S
Sbjct: 768 LSRLKNSRTERFVLRCTIFFFFVAS 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,630
Number of Sequences: 5004
Number of extensions: 47012
Number of successful extensions: 140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)