Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b04
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine r...    29   2.1  
Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z49967-2|CAA90248.2|  450|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82085-8|CAB04990.1|  270|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    27   6.3  
Z66496-6|CAA91281.3|  191|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z48585-12|CAI46589.1|  191|Caenorhabditis elegans Hypothetical p...    27   8.4  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    27   8.4  

>AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine
           receptor, class u protein25 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 381 FSVGITILFEIL--RIVSDAHFTAQKIHFREISFTLHTIHY*SIFLYQAKVCEGICNTF 211
           F++ + ++++++  ++   AH  +QK H  EIS TL TI     +L    +   IC  F
Sbjct: 219 FTINLILIWKLIHYKLTLSAHAKSQKPHKAEISLTLTTISMTCSYLTNGMIT--ICGLF 275


>Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical
           protein M162.3 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = -1

Query: 491 VSPRFFINGSGSVCNLLNNSSPYTLFISLSFRASVWYFPLV*QFCLKYCGSCLTRISRLK 312
           V+P  +I   G +C   N++SP  +++SL+      +  +V +  L    + +  IS LK
Sbjct: 264 VTPAEWILAFGQICWTCNHASPAIIYVSLNSTIRREFLKIVFRNTLAPV-NLIFGISELK 322

Query: 311 KFIFEKF 291
             +F K+
Sbjct: 323 SLVFRKW 329


>Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK218.5 protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 168 DLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 284
           DL    +  C   CG CC  P    P+++  F  ++CAT
Sbjct: 95  DLVKTAAASCPKTCGYCCESPDYKCPNVQ--FPRLNCAT 131


>Z49967-2|CAA90248.2|  450|Caenorhabditis elegans Hypothetical
           protein F54C9.2 protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 289 RNFSKMN--FLSREMRVRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNK-LHTL 459
           RNF K N  FLS + R       FK N  + GK   +   DS  K+VY EE+ +  +  L
Sbjct: 108 RNFEKNNKDFLSDQKRYP-----FKINLDSEGKAFFEIPLDSGTKNVYPEEIGSLIIGYL 162

Query: 460 PDPLMKNLGDTL 495
                K+LG TL
Sbjct: 163 KSAAAKHLGVTL 174


>Z82085-8|CAB04990.1|  270|Caenorhabditis elegans Hypothetical
           protein ZK218.11 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 162 NKDLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 284
           N DL N     C   CG CC+      P++R  F  ++C T
Sbjct: 108 NPDLVNAAVSTCPKTCGFCCQSSDYNCPNVR--FPRLNCDT 146


>Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical
           protein ZK218.1 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 168 DLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 284
           DL       C   CG CC+ P    P+++  F  ++CAT
Sbjct: 95  DLVRAAVSTCPKTCGYCCQSPDYNCPNVQ--FPRLNCAT 131


>Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical
           protein T03D8.7 protein.
          Length = 84

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 126 TNKYVKTLNCVPNKDLFNLNSDCCVAFCGKC 218
           +N Y+ T  C  N   ++ +  CC A CG+C
Sbjct: 54  SNCYMYTAYC--NNPYYSCSMSCCKATCGQC 82


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = +1

Query: 259 TLIVYRVQRKRNFSKMNFLSREMRVRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEEL 438
           TL   +++R +N  K++  +R     HD +  ++   T  +  T   ND D K+VY E  
Sbjct: 429 TLRHEKMERSQNPRKISRHNRSSA--HDEESARRRSRTFSQDDTAVPNDPDSKNVYYENQ 486

Query: 439 FNKLHTLPDPLMKNLGDTLXMNMTEGEKV 525
            +K       L + L D + + + E E V
Sbjct: 487 LSKKDYDIQELRRQLMD-VEIRLRENESV 514


>Z66496-6|CAA91281.3|  191|Caenorhabditis elegans Hypothetical
           protein E04D5.4 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 383 YFPLV*QFCLKYCGSC 336
           Y PL+ QFC K CG C
Sbjct: 124 YTPLLQQFCAKTCGFC 139


>Z48585-12|CAI46589.1|  191|Caenorhabditis elegans Hypothetical
           protein E04D5.4 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 383 YFPLV*QFCLKYCGSC 336
           Y PL+ QFC K CG C
Sbjct: 124 YTPLLQQFCAKTCGFC 139


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 365 QFCLKYCGSCLTRISRLKKFIFEKFLLRCTRYTIKVFS 252
           ++ + YCG   T+    KKF  E F +  T Y  ++F+
Sbjct: 550 KYFVLYCGFTKTKSHIRKKFTEEVFTVSLTNYRYQIFT 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,454
Number of Sequences: 27780
Number of extensions: 265850
Number of successful extensions: 769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)