Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b04
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 433 PHRTHSSYRYHSGHPCGI 380
           PH  HS+   HS +P  I
Sbjct: 440 PHHQHSTPLAHSSYPAAI 457


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 72  NFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNLNSDCCVAFCGKCCRYPHRP 239
           N+  N   +N +    NN N Y K    + N +   +     + +CG    +P RP
Sbjct: 328 NYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIPVPVPVPI-YCG---NFPPRP 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,734
Number of Sequences: 438
Number of extensions: 3351
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)