Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b03
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    30   2.0  
01_06_0193 - 27359575-27361962                                         29   4.5  
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311...    28   7.9  

>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 352 LKLTKMKWLSENND--EALDSRKFNALSGARLKDQRRESS 465
           L   K + +  NN   ++ D  KF+ALSGA L++QR  S+
Sbjct: 338 LSFQKQEQIIANNSTLQSHDQNKFSALSGANLENQRPSSA 377


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +1

Query: 301 LIENEENNFLGFDNPNILKL-------TKMKWLSENNDEALDSR-KFNALSGARLKDQRR 456
           L+    N+FL FDN N+L+L       T + W S +     + R +FN+   A L D+ R
Sbjct: 170 LVSQSGNHFLYFDNDNVLRLQYNGPEITSIYWPSPDYTAVQNGRTRFNSSKIAVLDDEGR 229


>12_01_0395 -
           3117315-3118117,3118354-3118478,3118558-3118770,
           3118850-3120076,3120537-3120622,3121197-3121223
          Length = 826

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 85  QNKPSFNFVNNEQEDKEADCEDVPILVERSKALHELIVSKKKSPNDNNGLKQKNETEPAA 264
           +NK  F    +++ + +   + +   V RS  LHE  V++  S + N GL   +   P+A
Sbjct: 115 RNKERFQL--HDEANNDIHLKSMSANVPRSSTLHENSVARNVSSSANTGLPMDSNCVPSA 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,491
Number of Sequences: 37544
Number of extensions: 257826
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)