Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12b01
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    50   3e-07
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    28   1.5  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    27   2.0  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   6.0  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    26   6.0  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
 Frame = +1

Query: 352 WKKYHRLNVIYAFIDELERDYPAICTVSVIGQSVEGRDIKMLKISN---SD----ARNS- 507
           +K Y  L  I +++  +   Y  +  +  +G + EGR I  LK++    SD     RN  
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKK 239

Query: 508 AIWLDASIHSREWISTAVVTYIADYIARNFHS---LPTSITNKDWHIVPILNPDGYEYT 675
            I +    H+REWI    V Y A  +   + S   +   +   +W  +P+LN DGYEYT
Sbjct: 240 VIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYT 298


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 111 ILNNEYNLNDECYKIIKRFAKD 176
           IL NEY  ND C+  I   AKD
Sbjct: 245 ILANEYTFNDPCWSGISETAKD 266


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 259 KKTKPGTVIPRGLKQIVPTNKPKKRKVKLMNWKKYHRLNVIYAFIDELER 408
           KKTK G  + +     +  +  K  K + + W ++HR NV  A ID LE+
Sbjct: 71  KKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHR-NVERAKIDHLEQ 119


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 111 ILNNEYNLNDECYKIIKRFA 170
           IL N Y+ NDE  K+++++A
Sbjct: 155 ILMNSYDTNDETCKVLRKYA 174


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 135 NDECYKIIKRFAKD 176
           NDEC  ++K+F+KD
Sbjct: 271 NDECLPVLKKFSKD 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,276
Number of Sequences: 5004
Number of extensions: 57925
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)