Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a24
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.56 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 398 REKPPGSILLDTKQYVRIDHWALCKRRD 315
           R+  P ++LLD++ YV++  +   KR D
Sbjct: 490 RDLKPENLLLDSQGYVKLVDFGFAKRLD 517


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 104 VLPRGIENCRPIARYGYVTAESSIYNK 184
           +LPRG +   P   + YV+  SS YN+
Sbjct: 605 LLPRGKKEGMPFQLFLYVSPVSSEYNQ 631


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 104 VLPRGIENCRPIARYGYVTAESSIYNK 184
           +LPRG +   P   + YV+  SS YN+
Sbjct: 605 LLPRGKKEGMPFQLFLYVSPVSSEYNQ 631


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 179 NKRPRCGQPRPQP--HQRETTAYCGGPSNVPLEKP 277
           +++P  G P PQP  HQ       G P N P + P
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPN-PSQGP 46


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 346 IRTYCLVSRRMLPGGFSLSSLHLPK 420
           +  Y    R MLP   S S  H+PK
Sbjct: 230 LNAYYYYMREMLPYWMSSSQYHMPK 254


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 346 IRTYCLVSRRMLPGGFSLSSLHLPK 420
           +  Y    R MLP   S S  H+PK
Sbjct: 230 LNAYYYYMREMLPYWMSSSQYHMPK 254


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 457 VARMVTTWMVRWIWASEGLTGKN 389
           +A +V  +++ WIW   G   +N
Sbjct: 165 LAGIVQPFLIHWIWTPHGWMRRN 187


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 251 VLHNKPLFPSGVVAASVVHIEVFYCKCYFQLLHIHTL 141
           +  N+P   + + +  +V  ++ + K  F  LH HT+
Sbjct: 226 IKQNRPTPAADIYSLGIVAWQMLFRKLPFAGLHSHTI 262


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 302 LCKENHSSMVFLREHYWVLHNK 237
           +CK  +SS+  LR H  + H +
Sbjct: 37  ICKRVYSSLNSLRNHKSIYHRQ 58


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 358 STCVSTTGPCASAV 317
           S+CVS  G C+S V
Sbjct: 919 SSCVSNDGGCSSLV 932


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,549
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)