Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12a23
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 80 3e-16
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 30 0.28
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 28 1.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 2.0
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 27 2.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 2.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.4
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 27 3.4
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil... 26 4.5
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 26 6.0
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 7.9
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 7.9
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 7.9
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 79.8 bits (188), Expect = 3e-16
Identities = 37/117 (31%), Positives = 61/117 (52%)
Frame = +2
Query: 68 ITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRH 247
++D QKIGVG ++GN+L + G + G ++ FF ++
Sbjct: 3 LSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD 62
Query: 248 KLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLN 418
++ S++FFSG+ + L +P+IG E GF LF+ F P I+FLR VP +G ++
Sbjct: 63 RMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 259 VRRLLQWDHYSTARLAHDRDDSRDVRLLAV 348
V R L W H+ST LA+DR R V L V
Sbjct: 83 VERKLGWGHFSTVWLAYDRAAKRRVALKVV 112
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 333 YISAIIPIMGQPSST-IVIPLKKATDAFSLCRWKKKKNVLWMPITHVRPLMNRILPMARR 157
+I + + QP +T + +P D F + W KK + W+P +V +N I P+ARR
Sbjct: 491 FIPWSLEVEKQPVTTKLKVPNLVRNDKF-VRLWHKKDDTFWVPKANV--FINFISPIARR 547
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -1
Query: 304 PAEQYYSDPTEEGDGRLQLVPLEEEEKRPLDADHTCQTTYEQD 176
P YY D + D ++ P + DA+H T+ QD
Sbjct: 1755 PQRSYYYDDLFDDDTTIRNAPSFRPQMGSFDAEHAVGATFSQD 1797
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 146 TTEVLRGIEMSFRNQLGLRQSSVYPLSQAYLIINFH 39
T E +++S RN++ L+QSS+ + ++Y NFH
Sbjct: 23 TLEAELKLKLSHRNKIPLKQSSIEEIKESY---NFH 55
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 277 TEEGDGRLQLVPLEEEEKRPLDADHTCQTTYE-QDIANG*ETFIEQQKY 134
TEE D + V E K P HT + Y+ +D E +EQ ++
Sbjct: 376 TEENDSTTEYVNTESSSKTPAPHKHTFNSCYQKKDYGYIPEVSVEQNRH 424
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 369 EGRNPLNNSKKPYISAIIPIMGQPSSTIVIP 277
+G+ PLN +K I +I+ PSS+++ P
Sbjct: 137 KGKTPLNEIEKEGIISILNKSASPSSSVISP 167
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 194 LTCVIGIQRTFFFFFQRHKLKASVAFFSGITIVLLGWPMI 313
+ C+IGI +F F RH L + SG+ + + M+
Sbjct: 190 INCLIGIWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMV 229
>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 576 CPCECKIYEKREKKNHVVKIKMNVLLYFSIVAFLNVSFF 692
CP +Y + + KNHV+ I +V+ + +L ++ +
Sbjct: 23 CPFLISVYHQFQTKNHVLDIFEDVIPSIQVYGWLTMTLY 61
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 678 LGMRQLKNTITHSFLFSQHDFFSLSFHKFYTHTDTIINIQYIKHYLK 538
L +++K+ + S +F+ S S H H+D+ +Q I +Y K
Sbjct: 453 LAQKRMKDKLKGSDVFTTLKITSKSLHNIDEHSDSDDEVQPICYYYK 499
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 222 VLWMPITHVRPLMNRILPMARRPLSNNRSTPRNRNVIPKPAR 97
V + P++ + L R +A LSNN S+PRN K AR
Sbjct: 172 VCYAPLSSFKTLSERESHVANC-LSNNSSSPRNMTEFLKHAR 212
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 308 MIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 424
++G++ L+LF F+P NF VP L L+ P
Sbjct: 298 VVGILGHFSKTLMLF--FIPQIFNFALSVPQLFGLVECP 334
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 215 GCRSHMSDHL*TGYCQWLGDLYRTTEVLRGIE 120
G S +D G+ QW+ YR E +RG E
Sbjct: 522 GVDSWFNDTENNGHAQWVHPDYRNKEYIRGTE 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,607
Number of Sequences: 5004
Number of extensions: 60354
Number of successful extensions: 218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -