Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a21
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.8  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.4  

>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = +1

Query: 256 SYLKVYNISKNLENMEILPVTNQF-NVGFNSEKAWSGPTWREAPAPVPTEAALAQRLERE 432
           SYL V  +SK       +P   +F     +S     G T      P P+ A ++  LE+ 
Sbjct: 246 SYLVVSAMSKVRRPTLTIPTPKKFVRAALSSIGLQRGGTNPYISQPYPSHAVMSWSLEQL 305

Query: 433 LRAAKG--ASELATAEVLVPAELLARASR 513
           L +AKG   S++A   + +    L + +R
Sbjct: 306 LGSAKGFVVSQVAAMHLSIRKRALRKEAR 334


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 489 GAAREGVAADPRASGGRALWVPGRSRHH----RRRGTKTSSLQNRPEY 620
           G+ARE  A  PRA  GR +     +R H    +++G    +  N  +Y
Sbjct: 672 GSAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVLPLTFVNEADY 719


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 537 RALWVPGRSRHHRRRGTKTSSLQNRPEYV--DHARNTSTP*TRPHELDESVAAILKKFNA 710
           +AL +      H+   +K+  +     YV  D  ++T T  +  HEL +  +  LK    
Sbjct: 10  KALSLKDEQGSHKNGHSKSHYISKNGSYVETDDVKHTDTHHSSKHELKKLKSHFLKDTLK 69

Query: 711 RRHHHH 728
            + +HH
Sbjct: 70  HKRNHH 75


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 536 PSASARVCRDALASSSAG 483
           P AS RVCRDA+   S G
Sbjct: 105 PVASIRVCRDAVTRRSLG 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,350
Number of Sequences: 5004
Number of extensions: 47347
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)