Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a19
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   3.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.6  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   7.5  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   7.5  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   7.5  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    25   9.9  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    25   9.9  

>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -2

Query: 306 TQWRTAHL*YRISTI*QKRCYFRDKHSQFGFLFTKHS*TFKTRY 175
           TQW T  L Y +       CYF +  S F F+ T  S TF  RY
Sbjct: 113 TQWSTDELRYFLCKKESDSCYFGNASSSFHFV-TSPS-TFFIRY 154


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 156 LLIVSKKEASHHDFDSNLDQSCT 88
           +LI   +E  H+DF   LDQ+C+
Sbjct: 287 VLIAQHEEVLHNDFARMLDQNCS 309


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 389 LRRLISKNKLKEPNFSSYFNYIQKNHNSIYIKF 487
           LR L+ K  L   NF+ +F  +   + ++Y+KF
Sbjct: 744 LRNLLEKQLLSY-NFTDWFASLGSEYENVYVKF 775


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 109 KFRSKLYVFFSTEYIVNTFKS 47
           ++ SKLY+ ++T Y++ T  S
Sbjct: 237 RYTSKLYIAYTTYYVIGTLAS 257


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 172 SVSSFKSSGMFRE*KSKLTMFISKITSFLLN 264
           + +SFK  G+F + KS   + ++ + SFL++
Sbjct: 188 NTTSFKDQGVFTDLKSVEKVLVNNLDSFLMS 218


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   FEFYHKIIKMNVLLLNVFTMYSVEKNTY 92
           F  + +  +MN L L +FT Y  +K TY
Sbjct: 218 FPVFKEYPQMNFLHLLIFTAYRKDKETY 245


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 293 QRTCDTESAQFNKKDVIFEINIVNLDFYSRNIPE 192
           +  CDT+    N  DV++  N+VN+  + RN  +
Sbjct: 104 EEKCDTDEL-LNLLDVVYAPNLVNILAFLRNFDQ 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,698
Number of Sequences: 5004
Number of extensions: 47063
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)