Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a19
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    29   2.5  
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    28   7.7  

>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +2

Query: 536 IRLYHKDYSDNCVI 577
           ++LYHK Y+DNC++
Sbjct: 844 LKLYHKSYADNCIV 857


>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 123 HDFDSNLDQSCTYFSQ-PNTL*THLKAIHSF*LFYDKIR 10
           H F  +L+    Y +  P+ +  HL+ +H   LF DK+R
Sbjct: 320 HHFSDSLEVPSDYMAMNPSAVSQHLRGLHRRSLFNDKVR 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,176,639
Number of Sequences: 37544
Number of extensions: 213762
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)