Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a18
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    30   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   3.5  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   3.5  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   6.2  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    25   8.1  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 328 YPYRAPVSLAPVHPPKGMPTAPPRVAPTAHCHLPTPSYR 212
           +PY +  +L PV      P+ P +  P +H   PTP  R
Sbjct: 144 FPYSSVAALTPVPKKPSKPSKPRKKVPVSHPLPPTPPSR 182


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 325 PYRAPVSLAPVHPPKGMPTAPPRVAPTAHCHLPTP 221
           P   P SL P  PP   P+APP +   A    P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 331 GYPYRAPVS-LAPVHPP--KGMPTAPPRVAPTAHCHLPTPS 218
           G P   P+   AP+ PP   GMP APP + P A    P P+
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPP-LPPAAPAPPPAPA 481



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 289 PPKGM---PTAPPRVAPTAHCHLPTPSYRRTGSNP 194
           PP+G    P  PPR AP+     P  S  R  SNP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP 388


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 488 VCSFKPSRALSESTSRLDMLTSRC*SSIR 402
           VCSF  + A+ ES+S   + TSRC   +R
Sbjct: 481 VCSFVNNVAVMESSSEKQLRTSRCLKIVR 509


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 298 PVHPPKGMPTAPPRVAPTAHCHLPTPSYRRTGS 200
           P  PP   PT PP+   T+   +P+ +    GS
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGS 268


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 262 PRVAPTAHCHLPTPSYRRT 206
           PR++P   C LPTP  R T
Sbjct: 72  PRLSPVHRCALPTPRMRLT 90


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +1

Query: 304 EKLEPCTGSPLCSCRTAHMSCIAVPLHRFPEWPRIELQHLDVSMSNLEVLSESALDGLKL 483
           +K++   G P  SC+T ++ C+     +     R  L+ L      LE +         L
Sbjct: 45  KKIKCNGGQPCISCKTLNIECVYAQKSQNKTLSREYLEELSERQLCLEYIFSRMCPNFNL 104

Query: 484 QT--LVLVANKLHHIE 525
           +T  L+ ++ KL   E
Sbjct: 105 ETKNLISISKKLSENE 120


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 397 WPRIELQHLDVSMSNLEVLSESALDGLKLQTLVL 498
           WP+  + H+D+S+  L VL+   L   ++  ++L
Sbjct: 314 WPQFHMPHMDLSVWRLVVLAICILIARRIPAVLL 347


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 400 PRIELQHLDVSMSNLEVLSESALDGLKLQTLVLVANKLHHI 522
           P ++L  L +  SN+ + +   + G+ LQ+ +LVA+  H +
Sbjct: 72  PELKLAWLGL-YSNIGLAAAKGIGGVALQSSILVADAAHQL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,629
Number of Sequences: 5004
Number of extensions: 51761
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)