Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a18
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   3.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 406 IELQHLDVSMSNLEVLSESALDGLKLQTL 492
           I ++H    ++++ VL  +A DG+K QTL
Sbjct: 207 ISMRHRGAHITDIVVLVVAADDGVKEQTL 235


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 314 SSFSGASAPTKRHAN 270
           S F GAS+P KR+ N
Sbjct: 17  SEFEGASSPKKRNKN 31


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 328 SPLCSCRTAHMSC 366
           +P+  C TAH++C
Sbjct: 358 TPVLDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 328 SPLCSCRTAHMSC 366
           +P+  C TAH++C
Sbjct: 69  TPVLDCHTAHIAC 81


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 328 SPLCSCRTAHMSC 366
           +P+  C TAH++C
Sbjct: 358 TPVLDCHTAHIAC 370


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 263 RCCWHAFWWVHWRQRNWSPV 322
           +CCWH F    ++ R+   V
Sbjct: 604 QCCWHCFNCTQYQIRDHKDV 623


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 481 LQTLVLVANKLHHIEQH 531
           LQ L L  NK+ H+E++
Sbjct: 504 LQILNLARNKVQHVERY 520


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 168 NNSVELDQSLALFFGTVFLIDLRSILKLDRFEGLV 64
           NN  E    +   F  +F  D  S L+ +RF G++
Sbjct: 378 NNENEGTYFILYDFNDIFEKDQASFLERERFLGII 412


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 289 PPKGMPTAPPRVAPT 245
           PP G P APP   P+
Sbjct: 47  PPGGPPGAPPSQNPS 61


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 168 NNSVELDQSLALFFGTVFLIDLRSILKLDRFEGLV 64
           NN  E    +   F  +F  D  S L+ +RF G++
Sbjct: 378 NNENEGTYFILYDFNDIFEKDQASFLERERFLGII 412


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 288 HQKACQQHRHV*RPPRTAISQHHHIGAL 205
           HQ    QH H  +PP  + S   ++ ++
Sbjct: 356 HQTQSLQHLHYRQPPTLSESYSSYVNSM 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,754
Number of Sequences: 438
Number of extensions: 3714
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)