Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12a16
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 93 3e-20
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 32 0.068
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 0.48
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 1.1
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 28 1.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 2.6
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 27 2.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 4.5
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 5.9
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 5.9
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 7.8
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 93.1 bits (221), Expect = 3e-20
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Frame = +1
Query: 175 FSKQYAHIYSARLCTFRNILTPLIKNKWSNKYKILKLCDLRESGTSCVIIGTLFKLQELK 354
+S+QYA IY ARL R +T KW +K ++ ++ D++ S C ++ T + LK
Sbjct: 25 YSQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVK-SDEDCWVVATAYMTTALK 83
Query: 355 PSILKELSDQLEIIPQPTRTHFVHDSDSL------VLEDELQRIKLVSDVIDIHQVVTGV 516
P+++ +++ I+ + +V D+ LED+ RI + VVTGV
Sbjct: 84 PNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAGVVTGV 143
Query: 517 VCAILGSEDEDGIFTVKDVCWPGCSIQKPLPVRNED-----RYIVLMSGLNMASKSADQI 681
V A+LG EDE G F V DVC+PG +P+ ++ YI +SGL +++ + I
Sbjct: 144 VLAVLGHEDEQGRFVVVDVCFPGI-FSHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGI 202
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 32.3 bits (70), Expect = 0.068
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 193 HIYSARLCTFRNI--LTPLIKNKWSNKYKILKLCDLRESGTSCVIIGTLFKLQELKPSIL 366
H+YS R +N+ LT + +W+ + I K +R + T+F + E+ P++
Sbjct: 452 HVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALN 511
Query: 367 KELSDQLEIIP 399
E+ ++ +I+P
Sbjct: 512 AEVIEK-QILP 521
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 137 LIVLHGFMKHHEIFPSSTPIYIQLGYVHSEI 229
L+VLH + H E FP S YI+ YV SE+
Sbjct: 1647 LVVLHKIVDHREAFPISD--YIRRAYVLSEL 1675
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 356 GFNSCSLNSVPIITQEVPLSRKSQS-FKILYLFDHLFFISGVKIFRNVHNLAEYIWAYCL 180
G+ +C L + +PL RK S +++LF ++ I+ K+ VH L ++ C
Sbjct: 315 GYEACILFELSPFLLGIPLLRKFASKVPVIFLFLNVIGIAAYKLEDPVHRLFVTAFSVCC 374
Query: 179 E 177
E
Sbjct: 375 E 375
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 119 LSRSWEENSSSAVDFGDTFKSIL 51
LS+ WE+ S++ F DTFK +L
Sbjct: 82 LSQEWEKQSANVKIFQDTFKRVL 104
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 118 RQIVDYTDSSTRFYEAPRD 174
R ++Y ++STR YE P+D
Sbjct: 526 RSTIEYIETSTRVYEMPKD 544
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 558 KYTILIFRS*NCTY-NSSDYLMDIYN 484
KY + RS N Y +SSDYLMD+ N
Sbjct: 546 KYAEISVRSLNSLYESSSDYLMDVSN 571
>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.1 bits (57), Expect = 2.6
Identities = 26/99 (26%), Positives = 40/99 (40%)
Frame = +1
Query: 238 PLIKNKWSNKYKILKLCDLRESGTSCVIIGTLFKLQELKPSILKELSDQLEIIPQPTRTH 417
P +K W + + ++ D ES +C I + +Q S+L + L +
Sbjct: 62 PTVKAAWESPQQYSEIEDFFESTQTCTIAQKVSTMQ--GKSLLNIWTKSL--------SF 111
Query: 418 FVHDSDSLVLEDELQRIKLVSDVIDIHQVVTGVVCAILG 534
FV +D DE +R + VV GVVC LG
Sbjct: 112 FVTSTDVFKYLDEYERRVRSKKALGHFPVVWGVVCRALG 150
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 331 LFKLQELKPSIL--KELSDQLEIIPQPTRTHFVHDSDSL--VLEDELQRIK 471
L + ++L P++ KEL Q++ + +PTRT + D+L + +DE+ R++
Sbjct: 143 LTEQKQLDPTLAAKKELDLQMDAVLKPTRTKKRSNEDNLEQMADDEVLRLR 193
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 632 MYLSSFLTGSGFCILQPGQQTSLTVNIPSSSSDPKIAHTTPVTT 501
+Y S +LTG+G + + SSSS P + TT T+
Sbjct: 111 LYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTS 154
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +1
Query: 37 TLSTNKMLLKVSPKST--ADEEFSSHDLE---RQIVDYTDSSTRFYEAPRDFSKQYAHIY 201
T+ TNK +L+ PK++ D+ + S + ++I+ +++ T + F K A Y
Sbjct: 206 TIVTNKRILRFEPKTSRGKDQLYFSPAFQGSMKEILSFSEEETAQCFSYSPFPKNLAEPY 265
Query: 202 SARLCTFRNIL 234
+ L T + I+
Sbjct: 266 TLALKTSKRII 276
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 361 ILKELSDQLEIIPQPTRTHFVHDSDSLVLEDELQRIKLVSDVIDIHQVV 507
+L E S IPQ +R+H + + L L+ QR + DIH V
Sbjct: 60 LLFESSSPGPNIPQSSRSHLLSQRNDLFLDSSSQRTPRSTRRGDIHSSV 108
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 4 IAKRGNSFTT*TLSTNKMLLKVSPKSTAD 90
I K GN FTT L ++LLKV K A+
Sbjct: 672 IDKSGNEFTTAYLELLEVLLKVGQKYLAE 700
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/90 (20%), Positives = 41/90 (45%)
Frame = +1
Query: 364 LKELSDQLEIIPQPTRTHFVHDSDSLVLEDELQRIKLVSDVIDIHQVVTGVVCAILGSED 543
+K+L ++ +IP + D + E ++ K DVI + +V G+ ++
Sbjct: 1085 MKKLDQRVSLIPSSIEFNIKTQKDKVEFEKNYEKSKKGPDVI-ANALVGGIPLSL--KTK 1141
Query: 544 EDGIFTVKDVCWPGCSIQKPLPVRNEDRYI 633
ED ++ + G Q+P+ +++ D +
Sbjct: 1142 EDSLYELSKFSQCG-EDQRPMVLKDPDHLV 1170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,678
Number of Sequences: 5004
Number of extensions: 58987
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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