Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a16
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0201 - 1592180-1592218,1592517-1592602,1592966-1593064,159...    78   6e-15
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78...    30   2.0  

>03_01_0201 -
           1592180-1592218,1592517-1592602,1592966-1593064,
           1593131-1593232,1593398-1593525,1593602-1593693,
           1593798-1593869,1593964-1594032,1594116-1594199,
           1594292-1594407,1594752-1594875,1594947-1595053,
           1595725-1595875
          Length = 422

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 41/102 (40%), Positives = 58/102 (56%)
 Frame = +1

Query: 181 KQYAHIYSARLCTFRNILTPLIKNKWSNKYKILKLCDLRESGTSCVIIGTLFKLQELKPS 360
           +QY+HIY  RL   RN+L  L+ + W     +  +  L E G  C+I+GTL+K  +LKPS
Sbjct: 21  QQYSHIYFTRLHHMRNLLHALVPS-WKPHLPVTTVLGLEE-GKDCIIVGTLYKHMKLKPS 78

Query: 361 ILKELSDQLEIIPQPTRTHFVHDSDSLVLEDELQRIKLVSDV 486
           IL E S +   IP     +F+H  D L+LEDE  R+ L   +
Sbjct: 79  ILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTLAGAI 120


>02_01_0106 -
           780984-781279,781355-781578,781684-781920,782023-782126
          Length = 286

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = +1

Query: 508 TGVVCAILGSEDEDGIFTVKDVCWPGCSIQKPLPVRNEDRYIVLMSGLNMASKSADQI 681
           TG+ C +L  +       +  V  P CS ++ + +   D+ + L+ G +    + D++
Sbjct: 37  TGIKCYVLAPDPTTRSLKIMQVIEPPCSSREGISIETLDKRLFLLGGCSWLKDANDEV 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,853
Number of Sequences: 37544
Number of extensions: 326374
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)