Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a14
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   1.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.4  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   5.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.9  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   5.9  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   5.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.7  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   7.7  

>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
 Frame = -1

Query: 496 SCHKYSFAIISICFSYTYNGLNLIEDI*KNR-HNRFV*KKPKFHSILNFFTRTKEH---- 332
           SCHK++  ++  C SY       I D+ + R  N+ + +K +  SIL    + K      
Sbjct: 621 SCHKFASNVVERCISY-------ISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVI 673

Query: 331 RKMKNKHCEETR-LSTGFQYVLIFVLE--LRSKHDRIGTDKHRSVSIS 197
           +K+ +   EE R L   + Y  I VL+     KH  +  ++ R  SIS
Sbjct: 674 QKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVERFRQKSIS 721


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 FAPQFQYKYEYILKPCTESCLFTVLIFHLSVFF 340
           F P   ++Y   L+P T  C+  +L+  L +FF
Sbjct: 492 FRPDVNFRYRLDLRPLTIRCVPYILLACLILFF 524


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 ITSVKVHRTMKTCTGKIKNMYYGIG 186
           + ++K HR +K+C   IK   +G+G
Sbjct: 129 VLNLKAHRDLKSCFRVIKGGSFGLG 153


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 556 KFLMTKYKIYIILQCFRVVYS 494
           +FL+ ++K+Y+I+ C  + Y+
Sbjct: 830 EFLLVQWKLYLIVACCTITYT 850


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 309 QCLFFIFLCSFVLVKKFKML*NLGF 383
           QC+FF   C+ +++K+F    ++G+
Sbjct: 203 QCVFFTLHCAVLIMKQFSYSHHMGY 227


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 541 KYKIYIILQCFRVVYSCHKYSFAIISICFSYT 446
           +YK Y+ILQC  VV +       + ++C  Y+
Sbjct: 104 RYKTYVILQCQHVVANFKFIVIILHAMCSVYS 135


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 391  QIYCAYFFKYLQLNLTRYM 447
            +IYCA +F ++ L  +R+M
Sbjct: 2205 KIYCADYFNHMDLKASRFM 2223


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 242 FAPQFQYKYEYILKPCTESCLFTVLIFHLSVFFRPSKKV*NAVKFRLFL 388
           F   FQ+  E   KPC+     + +++H SV F  + K  N  K RLFL
Sbjct: 102 FEKDFQFSKEKF-KPCSCQVSLSSVLYHCSVIF--TTKAENFEK-RLFL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,116
Number of Sequences: 5004
Number of extensions: 41119
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)