Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a13
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    84   2e-17
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.19 
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    28   1.00 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.00 
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.00 
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   5.3  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.0  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   9.3  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
 Frame = +1

Query: 220 RYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVI 399
           + TRA+R ++A+  Y   + + ++ A    PE+  K L VA +SD+GLCG +H+ +S++I
Sbjct: 61  KLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLI 119

Query: 400 RNRLSEPGA-ENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILT 576
           R  L +P   EN  +  +G+K R  L R   +        IG   P+F +A Q+++ IL 
Sbjct: 120 RRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILE 179

Query: 577 SGYEFGSGKIIYXKFKSVVSY 639
              ++    ++Y KF S VS+
Sbjct: 180 HAKDYDRIVLVYNKFASAVSF 200


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +1

Query: 307 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 471
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 472 LQRLYGKHIISVA 510
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 396 HFGYTSVYSSAQTSVRGHSNKQLLGVIFGRCNLSPFI---ELYCTFTIGTSSFQVTLSTG 226
           HF  +S  SS+  + R H  KQLL  IF     S  +    ++ + T+G+ SF    +  
Sbjct: 53  HFLSSSENSSSVRNTRTHKFKQLLHYIFFSNRSSSVLGKQNVHNSQTLGSVSFCEKHAID 112

Query: 225 VSLKENFTKLAN 190
           ++  EN  K  N
Sbjct: 113 INYSENVNKQLN 124


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 426 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 292
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 426 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 292
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 482 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 610
           C   ++L  L +S++   LS  +  +PL  + RDT L+   +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 AMTSDRGLCGAVHTGVSKVIRNRLSE 417
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 567 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 415
           SS ++  V  + W +  L  +TND  +++S+ DT R  S     DV+   F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 558 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 385
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 313 EDDPKQLFVAMTSDRGLCGAVHT--GVS 390
           + +P  L VA+ SDR  CG+++   GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,731
Number of Sequences: 5004
Number of extensions: 54076
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)