Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a13
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    40   0.001
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850...    31   0.59 
07_03_0571 - 19602755-19603831                                         31   0.78 
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    29   3.1  
03_02_0751 + 10919768-10920282,10920518-10920710,10920796-109209...    28   7.2  
08_02_0730 - 20472851-20473075,20473332-20474285                       27   9.6  
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015...    27   9.6  
03_05_0287 + 22759946-22760836                                         27   9.6  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = +1

Query: 307 PPEDDPKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQ 477
           P  D  K + VA+TSD+GLCG +++    VSK +    S P  E+ K + +G+K +  L 
Sbjct: 112 PSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLI 170

Query: 478 RLYGKHIISVANEIGRLP 531
           R    +I    +E+ + P
Sbjct: 171 RDSKDNIEMTVSELQKNP 188


>11_02_0119 -
           8502455-8503015,8503311-8504009,8504512-8504571,
           8504744-8504800
          Length = 458

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -2

Query: 528 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 349
           E ++  SN ++ L   ++ D     S  + LDVL    +  VAD +    +  +A+ +  
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164

Query: 348 GHSNKQLLGVIFGRCNLSP 292
             +    LG I G C  SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
 Frame = +1

Query: 229 RAERDLKAARPYGEGAVQ-FYERAEVTPPEDDP----------KQLFVAMTSDRGLCGAV 375
           RA+  + ++RP+ E  V+  Y   +    ED            K   V +T +RGLCG+ 
Sbjct: 68  RAQEAVVSSRPFSEALVEVLYNMNQEIQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSF 127

Query: 376 HTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQR 480
           +  V K    R+ E     ++  V+ VG K      R
Sbjct: 128 NNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR 164


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 419 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 294
           GSL+R R++        PH   S  I     + C+GSS  G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381


>03_02_0751 +
           10919768-10920282,10920518-10920710,10920796-10920986,
           10921148-10921306,10921390-10921720
          Length = 462

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 9   KQISKKNGFFNKKSYLDYNCK*HWHL 86
           ++I+K+ G +N K +LDYNC   +H+
Sbjct: 222 RRITKERGDYNFK-FLDYNCSVEYHV 246


>08_02_0730 - 20472851-20473075,20473332-20474285
          Length = 392

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 507 NTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYT 382
           ++ DV+ + SL+D A FI H   L + +  +   + +H  +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387


>05_07_0367 -
           29700855-29700920,29701092-29701149,29701446-29701503,
           29701800-29701857,29702154-29702211,29702508-29702551,
           29702840-29703022,29703192-29703249,29703545-29703602,
           29703897-29703954,29704250-29704307,29704956-29705013,
           29705310-29705367,29705664-29705721,29706348-29706398,
           29706695-29706752,29707049-29707106,29707403-29707459,
           29707754-29707810,29708085-29708135,29708431-29708507,
           29708785-29708842,29709139-29709195,29709490-29709546,
           29709821-29709893,29710167-29710224,29710521-29710578,
           29710875-29710931,29711558-29711608,29711904-29711980,
           29712258-29712315,29712612-29712669,29712966-29713016,
           29713667-29713717,29714014-29714057,29714368-29714444,
           29714722-29714779,29715076-29715126,29715423-29715480,
           29715776-29715833,29716130-29716187,29716484-29716534,
           29716831-29716907,29717185-29717242,29717539-29717589,
           29718240-29718316,29718594-29718651,29718947-29719004,
           29719301-29719351,29719648-29719705,29723277-29723334,
           29723631-29723681,29724331-29724388,29724684-29724741,
           29725038-29725088,29725385-29725442,29725738-29725814,
           29726092-29726148,29726444-29726501,29726798-29726848,
           29727070-29727075
          Length = 1209

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 476 RDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPR-DTSLVPERSFTTSSSLW 631
           R   E+T+    M SD+      T  SWP+L + R  T     R F T ++ W
Sbjct: 420 RRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVTYATSW 472


>03_05_0287 + 22759946-22760836
          Length = 296

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 229 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGL 363
           R+  DLK   P+  G  +  ERA +   ++DP  +FV    D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,942,476
Number of Sequences: 37544
Number of extensions: 348895
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)