Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a12
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   3.7  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   4.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   8.5  

>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 352  RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFK 501
            R+  T A N ++  ++ TQ     KLEN      S  +SSKS D A S K
Sbjct: 862  RETRTSASN-ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKS-DAAKSIK 909


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 379 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKE 504
           T  A+  +     DV+  N       NG +S+S DNA   KE
Sbjct: 405 TMTAIRYIDLNYVDVQYTNLRGGAYGNGNNSESSDNAQLKKE 446


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 374 CASVDIFLYKCLMYLCD-DIIYYASESVADR 285
           C  V+I   KC  Y CD DI+ +  +++  R
Sbjct: 128 CVFVNIITLKCHCYSCDADIVIFDKKNLVVR 158


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/78 (20%), Positives = 38/78 (48%)
 Frame = +1

Query: 208 RASIKQQGKATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDA 387
           R S+ ++ + +   + A  K+    +LS  + +     S    ++ L   + + A+NT +
Sbjct: 42  RLSLSERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIVSLLQEL-STLQSVAENTQS 100

Query: 388 AVEQVTQEVKDVKLENGN 441
           ++ Q+T E+K++     N
Sbjct: 101 SIVQMTSEIKNLDFAKQN 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,769
Number of Sequences: 5004
Number of extensions: 32339
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)