Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a12
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140...    30   1.2  
12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           28   4.9  
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    28   4.9  
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159...    27   8.6  

>03_05_0599 -
           26012956-26013316,26013444-26013736,26013813-26014040,
           26014666-26014897,26015392-26015475,26015562-26015623,
           26016263-26016367,26016458-26016481
          Length = 462

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 235 ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 414
           AT G+++ A  +A+   L AT  +   M  S +    L      E Q  D  + + T  V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174

Query: 415 KDVKLEN 435
           KD +L+N
Sbjct: 175 KDEELQN 181


>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +3

Query: 90  LVISQTKTMTSIL*RSPYSLRKGTIRASHGCCQTLELISPRQYQAARQGDSRQY*CSNEK 269
           L I  TKT + +  +  Y+L  G++    G     + I P     A +  S +   S  K
Sbjct: 301 LAIENTKTESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVK 360

Query: 270 CVA*TPVRY 296
            VA  PV Y
Sbjct: 361 AVANDPVAY 369


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 462
           ++S EAQ  + AVE    + K  K  N N  GA  G
Sbjct: 57  RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92


>09_04_0703 -
           19614057-19614264,19615305-19615407,19615880-19615973,
           19616216-19616229,19616384-19616595,19617653-19617940,
           19618275-19618362,19618444-19618515,19618597-19618672,
           19618755-19618813,19618953-19619016,19619253-19619402
          Length = 475

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 124 FCKDHLTVFEKVRFAHLTGVVKHWSSFRRASIKQQGKATAG 246
           F +D+ + + +V F +    VKHW++F + +I+  G   AG
Sbjct: 169 FIEDY-SAYAEVCFKNFGDRVKHWATFNQPNIEPIGGFDAG 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,517
Number of Sequences: 37544
Number of extensions: 197763
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)