Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a12
         (504 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061400-1|AAL28948.1|  791|Drosophila melanogaster LD32732p pro...    32   0.38 
AE014296-1853|AAF50131.1|  791|Drosophila melanogaster CG6418-PB...    32   0.38 
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    29   2.7  

>AY061400-1|AAL28948.1|  791|Drosophila melanogaster LD32732p
           protein.
          Length = 791

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = +1

Query: 229 GKATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQ 408
           G A+ G ++ +T S S    S  DS++ Y  +++   K   RK  T+    D   E   +
Sbjct: 46  GGASRGGVTGSTTSTSKHGYSTLDSISQYTNATNLVGK---RKHHTDDDYFDDDDEPREK 102

Query: 409 EVKDVKLENGNAPGASNGTSSKSEDN 486
           E++   +    +PGA   ++ K ED+
Sbjct: 103 EIEQAYIPAPGSPGAPPTSAKKQEDS 128


>AE014296-1853|AAF50131.1|  791|Drosophila melanogaster CG6418-PB
           protein.
          Length = 791

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = +1

Query: 229 GKATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQ 408
           G A+ G ++ +T S S    S  DS++ Y  +++   K   RK  T+    D   E   +
Sbjct: 46  GGASRGGVTGSTTSTSKHGYSTLDSISQYTNATNLVGK---RKHHTDDDYFDDDDEPREK 102

Query: 409 EVKDVKLENGNAPGASNGTSSKSEDN 486
           E++   +    +PGA   ++ K ED+
Sbjct: 103 EIEQAYIPAPGSPGAPPTSAKKQEDS 128


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 352 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTS 468
           RK+  + +NT A ++Q  +E++D    NG +  ASN TS
Sbjct: 505 RKVRGKRRNTIAGIDQ--KEIQDAANGNGESKNASNATS 541


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,160,099
Number of Sequences: 53049
Number of extensions: 341650
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)