Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a12
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.34 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.6  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 169 HLTGVVKHWSSFRRASIKQQ 228
           HL+G   HW S RR S  Q+
Sbjct: 262 HLSGGTNHWDSGRRKSAAQR 281


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 352 RKMSTEAQNTDAAVEQ-VTQEVKDVKLENGNAP 447
           RK+  E + TD  + Q + ++V D +L NG  P
Sbjct: 382 RKLDEEMKRTDELLYQMIPKQVAD-RLRNGENP 413


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -2

Query: 377 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 279
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 279 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -2

Query: 377 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 279
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 279 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -2

Query: 377 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 279
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 218 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 250


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 92  SDFTN*NHDEHFVKITLQSSKRYDSRISRVLSNIGAHFAAPVSSS 226
           S F N   DE FV +TL    R       VLS    +F   + S+
Sbjct: 20  SAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKST 64


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -2

Query: 377 FCASVDIFLYKCLMYLCDDIIYYAS 303
           +  ++DI+L  C +++   ++ YA+
Sbjct: 300 YVKAIDIYLVMCFVFVFAALLEYAA 324


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 140 LQSSKRYDSRISRVLSNIGA 199
           L+ + + DSR++R +  +GA
Sbjct: 374 LEENNKIDSRVTRFVVAVGA 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,149
Number of Sequences: 438
Number of extensions: 1957
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)