Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12a11
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    29   0.40 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.2  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    27   2.1  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   2.8  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    26   3.7  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.5  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 476 VGLVHLMQHLDRHVSSQSSEPPDHRGLRFPVARRGSE 366
           VG V+ +  +  H S Q + PP+HR + F + ++  E
Sbjct: 143 VGAVYALHRIMSHKSLQHALPPEHRNIWFDMEKQKKE 179


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 204 FRLRSHATASPDALAVK-GLFRPQSPFATEGTLRTL 100
           F +  H+T SP ++  K   F P S FAT+  LR L
Sbjct: 248 FVIVDHSTPSPPSIRTKLEAFAPNSTFATQKRLRRL 283


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 158 TAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKNVRNDLESALVG 307
           T  A+G    C  +R ETYD N +   K S   N++ K+   DL + + G
Sbjct: 48  TKDAAGYVYGCAGKR-ETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFG 96


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 343 MRFYIFEPNVT*AN*STLQIVSNVFGNFILAPAPFIMMFKI--IIVSFFP 200
           +R Y F PN      + L++ S V   F+LA  P+I M +I  ++   FP
Sbjct: 204 LRVYCFTPNFRPQFLNILKLGSTVISIFLLAFGPWIYMKQIPQLLSRLFP 253


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 299 LVGLCDVWFEDIKPHLIRNNIKVHFHGAPPESGDHDGL 412
           L  + + WF+ +KPH+  + I   +   PP    H+ L
Sbjct: 59  LTKISEFWFDVLKPHVQTHLITSRWEELPPVITKHEEL 96


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 392 SGDHDGLAAHLTDCSHVDPGAASDVRDPPPSSRI*FPNCSFSNHTILSVIGGAM 553
           S DH  L+ +    S + P   S V    P SR   PN SF  +   +V GG+M
Sbjct: 347 SQDHAELSYYQQSPSMMPPYDRSSVYFQQPLSRTDVPNQSFQQYP-TTVDGGSM 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,454
Number of Sequences: 5004
Number of extensions: 44061
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)